Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6145
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   10.0 

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 418 CFSGTSSRS-ACASLQLIFAMEFSEFSCKIYL 326
           C S T++   +C  + L+F  EFS +  +IY+
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKREFSYYLIQIYI 250


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 418 CFSGTSSRS-ACASLQLIFAMEFSEFSCKIYL 326
           C S T++   +C  + L+F  EFS +  +IY+
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKREFSYYLIQIYI 250


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = -2

Query: 322 WSRSCSGCYWRRR---GRVVWL 266
           WS  CS C W+ +     V WL
Sbjct: 357 WSGFCSQCIWQEKIVFAAVTWL 378


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 103 SSAPRFKTPCIPATSHRYHTTPTASHYSPRSTSRDHL 213
           +S  +F TPC P+        PT+   +  S+  D L
Sbjct: 385 ASGAQFATPCTPSPPRGPGGVPTSVIQAATSSVSDDL 421


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 139 ATSHRYHTTPTASHYSPRSTSRDH 210
           AT H  H+TP A    P +    H
Sbjct: 438 ATPHHQHSTPLAHSSYPAAIQIGH 461


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 157 DSDGMWLVCRAS*SGALNYSLS 92
           +S G WL C A+ S  LN   S
Sbjct: 44  NSSGAWLDCTATGSPPLNIDWS 65


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 157 DSDGMWLVCRAS*SGALNYSLS 92
           +S G WL C A+ S  LN   S
Sbjct: 44  NSSGAWLDCTATGSPPLNIDWS 65


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 152 RWDVAGMQGVL 120
           RW+V G+QG L
Sbjct: 441 RWNVLGVQGAL 451


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 55  IFVGISEIVLEERRGGS 5
           IF     IVLEERR  S
Sbjct: 225 IFCAARRIVLEERRAQS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,383
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)