Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6144
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   1.0  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.4  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   5.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   7.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.7  

>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 596 CTAVNVTFEIYIRLRFAGNWMALGDR 673
           CT V ++F   IRL F G W+   D+
Sbjct: 364 CTEVKISFHERIRLEFEGEWLDPNDQ 389


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 673 PVTERHPISREA*SN--VYFKRHVDSCAVAARNVGRMLFLPQSRNIPRPHFDARSVRAVG 500
           PVT + P   E  +N  ++F   V    +++R + + L+ P SRN+ + H     ++ + 
Sbjct: 401 PVTPKFPSVTEIEANARLFFFHGVKLYKISSRILTK-LYSPNSRNVTKKHISYAVIQDLE 459

Query: 499 NRIDSF 482
             +D F
Sbjct: 460 QLLDGF 465


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 206 QFQVTVAMEERFVFENFNLESLRYSKFKKTNRPRIEL 316
           +F   V  E  F   N N+ SLR +KFK++N    EL
Sbjct: 510 KFAEAVKKEVTFGSGNTNIGSLRQTKFKQSNYTPPEL 546


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 524 VKMRSRNITGLWQKEHSTHISRGNCTAVNVTFEIYIRLR 640
           + + S+N+T   +K    H+   N  +++ T  I+ RLR
Sbjct: 287 LNVNSQNLTSTLEKYKKMHLQNPNNFSLDFTLSIFERLR 325


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 545 ITGLWQKEHSTHISRGNCTAVNVT 616
           IT L   E +T+I++GN T+ NVT
Sbjct: 57  ITNLSMLELATNIAKGNYTSYNVT 80


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 769 SRINRSQFNCNIVCGQGLECG 707
           S++N   F C  VC + L CG
Sbjct: 329 SKVNTEPFRCENVCDELLPCG 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,701
Number of Sequences: 5004
Number of extensions: 70845
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)