Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6144
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0074 - 27509124-27509199,27509613-27512143                       33   0.27 
06_03_0964 - 26372924-26372990,26373172-26373686                       30   1.9  
08_01_0713 - 6307737-6308789,6308886-6309056                           29   3.3  
01_05_0702 - 24393915-24394757,24396258-24396689                       29   3.3  
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    29   5.8  
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416...    28   7.7  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    28   7.7  

>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 554 LWQKEHSTHI-SRGNCTAVNVTFEIYIRLRFAGNWMALGDRRRHLAGRGTHGAAFESL 724
           L   +HS HI +  N   +NV+++I+    + GNW     RR+H++  G + A   SL
Sbjct: 489 LVDSDHSYHIMTETNHRLLNVSYDIH----YVGNWSLETFRRQHISAEGVYDAKTGSL 542


>06_03_0964 - 26372924-26372990,26373172-26373686
          Length = 193

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 501 PTARTDRASKCGRGILRDCGRKS 569
           P + T RA +CGR + R CGRK+
Sbjct: 73  PASTTARARRCGRIVRRCCGRKT 95


>08_01_0713 - 6307737-6308789,6308886-6309056
          Length = 407

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 297 LVFLNFE*RRDSRLKFSKTKRSSIATVT*NCSAPLTKTPVYEWTNEYC 154
           L FL F    +S   F+KT     A V  N SA +   P+Y   ++YC
Sbjct: 16  LTFLQFSKAANSHYLFNKTSALEAADVNGNNSAEILAAPLYP-CSDYC 62


>01_05_0702 - 24393915-24394757,24396258-24396689
          Length = 424

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 697 PAPGQVTAPVTERHPISREA*SNVYFKRHVDSCAVA-ARNVGRMLFLPQSRNIPRPHFDA 521
           P  G++  PV     I       V+F     SC++  ARN+ R L +P+   +PRP  + 
Sbjct: 76  PVAGRIAEPVPGEPEIDCTG-EGVWFIEAEASCSLEEARNLERPLCIPKEELLPRPPPEV 134

Query: 520 R 518
           R
Sbjct: 135 R 135


>02_05_0969 +
           33165396-33165935,33166352-33166883,33166988-33167242,
           33167515-33167606,33167745-33167942,33168049-33168240,
           33168341-33168562,33168858-33169024,33169117-33169210,
           33169308-33169364,33169459-33169587,33169681-33169752,
           33170180-33170293,33170419-33170580,33170666-33170794,
           33171057-33171158,33171266-33171342,33171470-33171592,
           33171666-33172227
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 532 AVAEYYGIVAERAFDPH--FARQLHSCQRDV 618
           AV   YG+V   A DP     +Q HSC RD+
Sbjct: 162 AVEPLYGVVLRLAVDPRPKVRKQSHSCLRDI 192


>11_01_0530 -
           4164590-4165264,4165378-4165467,4167482-4168011,
           4168094-4168603,4172207-4172432
          Length = 676

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 590 GNCTAVNVTFEIYIRLRFAGNWMALGDRRRHLAGRGTHGAAFESLTT 730
           G+  AV    ++       G     GD   HLA R  HGAA E+L +
Sbjct: 140 GHAGAVTAIVQLLALDSILGCKNEAGDTALHLAARNGHGAAVEALVS 186


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 601 CAVAARNVGRMLFLPQSRNIPRPHFDARSV-RAVGNRIDSFVRCIKERSRGRN 446
           C +   +VGR     ++  +P  H + R++ R+   RI +  RC + R++GRN
Sbjct: 166 CWLGGDDVGREQ-AAEAEPVPLRHREPRALQRSHATRISTLPRCRERRTQGRN 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,622,268
Number of Sequences: 37544
Number of extensions: 481666
Number of successful extensions: 1334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)