Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6144
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    29   5.3  
AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +3

Query: 180 QEFSLMAPNNFKLPLQWKNVSFSKISISNLFAIRNLKRLTVLES 311
           Q+FS +  NNF   L   ++  S  +I+NLF I NLK L VL S
Sbjct: 109 QDFSNLC-NNFPNLL---SLDISSTNITNLFGIGNLKTLQVLSS 148


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 82  ERTNRGFSNETTMNLYRTGQSTGETIFICPLIHRSFR*WRRTISSYR 222
           +   RG++N     +    +  G  ++ C ++H +   WRR   SY+
Sbjct: 688 QHERRGYNNAQYQEVQCPIEEDGSALYYCGVVHVNMDIWRRITQSYQ 734


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 82  ERTNRGFSNETTMNLYRTGQSTGETIFICPLIHRSFR*WRRTISSYR 222
           +   RG++N     +    +  G  ++ C ++H +   WRR   SY+
Sbjct: 688 QHERRGYNNAQYQEVQCPIEEDGSALYYCGVVHVNMDIWRRITQSYQ 734


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 82  ERTNRGFSNETTMNLYRTGQSTGETIFICPLIHRSFR*WRRTISSYR 222
           +   RG++N     +    +  G  ++ C ++H +   WRR   SY+
Sbjct: 688 QHERRGYNNAQYQEVQCPIEEDGSALYYCGVVHVNMDIWRRITQSYQ 734


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +2

Query: 125 YTERVRVREKQY--SFVHSYTGVFVNGA--EQFQVTVAMEERFVFE-NFNLESLRYSKFK 289
           YT R+ + E++     + SY  +    A  EQ  +T+ +E+      +F LE+L   + K
Sbjct: 29  YTSRLFICEQEEVNKMIESYQKIDDKYALFEQMFLTIFLEQEVEMAYSFGLENLNEQQLK 88

Query: 290 KTNRPRIELGSF*RFVSRV 346
              + R  +G F RF++ +
Sbjct: 89  VEQKFRTHVGKFQRFITGI 107


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 228 WKNVSFSKISISNLFAIRNLKRLTVLESN*EAFSVSFRAFLPVAVLVHYERFKLLIIAPL 407
           W N S    ++++  AI    R+++L+S    F +    F P+ ++ H+       + PL
Sbjct: 197 WNNCS----TVASNKAISRATRISLLDS----FMIFAFDFTPIFLMTHFPEVNFRSVGPL 248

Query: 408 SAKCFHYG 431
           SA C + G
Sbjct: 249 SAFCKNLG 256


>AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical
           protein C33E10.2 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 559 PQSRNIPRPHFDARSVRAVGNRIDSFVRCIKER 461
           P+   +  P+F A ++  + N+ID F+  I ER
Sbjct: 268 PEVARVFNPNFSAHNINGIKNKIDRFLVIIYER 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,364
Number of Sequences: 27780
Number of extensions: 407318
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)