Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6142
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   1.5  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   8.2  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 181 RVFRSLFHSRALWTGIVMRIIVVDKRYR 98
           +V +SL H+  ++ G +  + +VDK YR
Sbjct: 73  QVLKSLLHAATIFIGPLYEVWIVDKEYR 100


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 120 IMRITMPVHKAREWKRERNTRFTAPIFYDPNCTDKL 227
           I R ++ V K R W+R+    F   IFY  N  +++
Sbjct: 107 IPRTSIRVSKLRYWQRDYRLAFPNFIFYFDNVDEEI 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,528
Number of Sequences: 5004
Number of extensions: 40141
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)