Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6142
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   6.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 349 VRIEVFCDFDNGFIP 305
           +++ +FCD+D   IP
Sbjct: 40  LKLYLFCDYDRDIIP 54


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 168 ERNTRFTAPIFYDPNCTDKLIL 233
           E+NTR       D N TD+LI+
Sbjct: 81  EKNTRDIVQAVLDDNETDQLIV 102


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 528 QSINIAQCRCV 560
           + +N+A CRCV
Sbjct: 602 KKVNVAGCRCV 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,073
Number of Sequences: 438
Number of extensions: 2894
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)