Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6141
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254...    29   5.5  

>05_07_0010 -
           27024013-27024171,27024286-27024699,27025389-27025445,
           27025544-27025637,27025775-27025868,27025949-27026117,
           27026450-27026554,27026665-27026784,27027190-27027735
          Length = 585

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 395 LHRANDIIKISLHIEGWRLLGLRSTFASLQESHLKVKIWRKYYNKK-LLRLEVSIKNIEL 219
           L R  DI+ +   I GW LL     + + Q +  K  +   Y+N++ LL L V ++N+ L
Sbjct: 435 LRRGFDILDLDGGI-GWELLTSMVRYKARQRTGAKAALAHPYFNREGLLGLSV-MQNLRL 492

Query: 218 LMLIPNETD 192
            +L   + D
Sbjct: 493 QLLRATQKD 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,257,876
Number of Sequences: 37544
Number of extensions: 465127
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)