Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6141
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025451-12|ABA54427.1|  161|Caenorhabditis elegans Hypothetical...    30   1.6  
Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   4.9  
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    28   6.5  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF025451-12|ABA54427.1|  161|Caenorhabditis elegans Hypothetical
           protein C24H12.12 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 606 FLYKAQVGPLMLHCSHLWTRVPGISYFQMTP 698
           ++ K + GP++ HC+ +W  +P + + +  P
Sbjct: 51  YVLKLEGGPVLPHCAEMWVNIPRLDFQKCFP 81


>Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical
           protein T09B9.2 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 624 LVLCKENCFALLRTPGVLNAYLIL 553
           ++LC  N FA L TPGVL A + L
Sbjct: 381 IILCLANAFAGLHTPGVLTAIVQL 404


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 657 RGGNSAASEG---QLVLCKENCFALLRTPGVL 571
           +G N +   G   Q+ L KENC  L+R PGVL
Sbjct: 466 KGANKSEEAGKWMQMELKKENCGELVRLPGVL 497


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 657 RGGNSAASEG---QLVLCKENCFALLRTPGVL 571
           +G N +   G   Q+ L KENC  L+R PGVL
Sbjct: 612 KGANKSEEAGKWMQMELKKENCGELVRLPGVL 643


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 307 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 414
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 307 CKLAKVLLKPNSLHPSICKLILIMSLARCRYLSNIL 414
           C + +++ KP  L  +IC L  I+  A C Y  +I+
Sbjct: 2   CNIFQIVWKPMLLRRTICILACIVQFATCGYQRSIV 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,639
Number of Sequences: 27780
Number of extensions: 393166
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)