Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6140
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.22 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   2.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   3.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    25   8.4  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   8.4  

>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +2

Query: 11  EESNHHHSYLYHCQH 55
           + +NH+H++LYHCQ+
Sbjct: 76  DANNHNHAFLYHCQY 90


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   HEESNHHHSYLYHCQHYNSELP 73
           H E +HHH + +H  H + + P
Sbjct: 295 HHEGHHHHHHHHHHHHSHDDDP 316


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 277 FMHSKCRGMIPRPAYLTMHL 336
           +M S+  G IPRP Y+  HL
Sbjct: 783 YMKSRENGTIPRPLYVISHL 802


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 317  LILLCIYSNEQHT 355
            L+ LC YSNEQ T
Sbjct: 1670 LVFLCAYSNEQQT 1682


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 VP*NSNKFTMTKALYEGF*NIFKHIYF 253
           +P  SN   + KA+Y+    IF H+Y+
Sbjct: 165 LPFPSNFLVIVKAIYKQMFRIFAHMYY 191


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 162 SYLTYPRTPINSQ*PKL-CTKAFRIFLSTYILSH 260
           S+  Y   P NS+   + CTK  R FLS YI  H
Sbjct: 66  SFPQYGSYPNNSELDYVVCTKCDRPFLSEYIEDH 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,296
Number of Sequences: 5004
Number of extensions: 40318
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)