Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6140
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0005 + 9459181-9459409,9459672-9459714,9460274-9460360,946... 28 3.6
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 28 4.8
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 28 4.8
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 27 6.3
07_03_1558 - 27722852-27722963,27723191-27723240,27723338-277234... 27 6.3
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 27 6.3
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 27 6.3
03_05_0225 + 22111269-22111327,22111587-22111638,22112148-221121... 27 6.3
03_03_0051 - 14091944-14091949,14092045-14092234,14092328-140924... 27 6.3
03_03_0049 + 14082358-14082613,14084662-14084795,14084883-140849... 27 6.3
>10_06_0005 +
9459181-9459409,9459672-9459714,9460274-9460360,
9460669-9460810
Length = 166
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +2
Query: 191 KFTMTKALYEGF*NIFKHIYFVSRVISDCSCILSVGE 301
KF++ L ++ H ++V ++++CSC+ +G+
Sbjct: 87 KFSLRMKLIMKDLSVISHAFYVKLILNECSCVHMLGQ 123
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 27.9 bits (59), Expect = 4.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 5 RHEESNHHHSYLYHCQHYNSE 67
+H + +HHH + H QHY +
Sbjct: 68 QHYQPHHHHQHHQHWQHYGED 88
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 473 CALSSGNLIRVVNKTRTIIVCLFASATAVDRC 378
CA+S N +++ R + LFA +T + +C
Sbjct: 192 CAMSFDNFVQITGDARAVRKALFAVSTIIYKC 223
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 10 RGIKPSPFVFIPLSTLQFRAATFTFYLLYFAT 105
RG P P F+P L R A F F+L A+
Sbjct: 79 RGPTPKPHNFVPPKILNLRVAFFFFFLRKLAS 110
>07_03_1558 -
27722852-27722963,27723191-27723240,27723338-27723406,
27723507-27723571,27724058-27724145,27724294-27724362
Length = 150
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 299 PLHLECMNNHLSHVRQNICA 240
PLH C+N H+ ++ ICA
Sbjct: 86 PLHWACLNGHIEVIKALICA 105
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 17 SNHHHSYLYHCQHYNSELPLLHFT 88
SNH S H QH+ PLLH T
Sbjct: 115 SNHDESSDNHDQHFEENDPLLHLT 138
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 17 SNHHHSYLYHCQHYNSELPLLHFT 88
SNH S H QH+ PLLH T
Sbjct: 35 SNHDESSDNHDQHFEENDPLLHLT 58
>03_05_0225 +
22111269-22111327,22111587-22111638,22112148-22112151,
22112981-22113114,22113201-22113314,22113386-22113505,
22113587-22113618,22113854-22113866,22114144-22114242,
22114388-22114464,22114733-22114922,22115020-22115025
Length = 299
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 17 SNHHHSYLYHCQHYNSELPLLHFT 88
SNH S H QH+ PLLH T
Sbjct: 74 SNHDESSDNHDQHFEENDPLLHLT 97
>03_03_0051 -
14091944-14091949,14092045-14092234,14092328-14092431,
14092503-14092634,14092721-14092819,14093096-14093108,
14093344-14093375,14093458-14093577,14093648-14093761,
14093848-14093981,14095005-14095047,14095394-14095445,
14095703-14095761
Length = 365
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 17 SNHHHSYLYHCQHYNSELPLLHFT 88
SNH S H QH+ PLLH T
Sbjct: 87 SNHDESSDNHDQHFEENDPLLHLT 110
>03_03_0049 +
14082358-14082613,14084662-14084795,14084883-14084996,
14085067-14085186,14085269-14085300,14085536-14085548,
14085825-14085923,14086010-14086141,14086213-14086316,
14086410-14086599,14086695-14086700
Length = 399
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 17 SNHHHSYLYHCQHYNSELPLLHFT 88
SNH S H QH+ PLLH T
Sbjct: 121 SNHDESSDNHDQHFEENDPLLHLT 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,704,748
Number of Sequences: 37544
Number of extensions: 240531
Number of successful extensions: 365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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