Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6140
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34059-1|AAA35627.1|  916|Homo sapiens cadherin-4 protein.             29   9.0  
BC112150-1|AAI12151.1|  916|Homo sapiens cadherin 4, type 1, pre...    29   9.0  
BC101651-1|AAI01652.1|  916|Homo sapiens cadherin 4, type 1, R-c...    29   9.0  
AL365401-1|CAC26840.2|  916|Homo sapiens cadherin 4, type 1, R-c...    29   9.0  
AL365229-1|CAI16510.1|  916|Homo sapiens cadherin 4, type 1, R-c...    29   9.0  
AL162457-1|CAH73749.1|  916|Homo sapiens cadherin 4, type 1, R-c...    29   9.0  
AL109911-1|CAI19181.1|  916|Homo sapiens cadherin 4, type 1, R-c...    29   9.0  

>L34059-1|AAA35627.1|  916|Homo sapiens cadherin-4 protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>BC112150-1|AAI12151.1|  916|Homo sapiens cadherin 4, type 1,
           preproprotein protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>BC101651-1|AAI01652.1|  916|Homo sapiens cadherin 4, type 1,
           R-cadherin (retinal) protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>AL365401-1|CAC26840.2|  916|Homo sapiens cadherin 4, type 1,
           R-cadherin (retinal) protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>AL365229-1|CAI16510.1|  916|Homo sapiens cadherin 4, type 1,
           R-cadherin (retinal) protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>AL162457-1|CAH73749.1|  916|Homo sapiens cadherin 4, type 1,
           R-cadherin (retinal) protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


>AL109911-1|CAI19181.1|  916|Homo sapiens cadherin 4, type 1,
           R-cadherin (retinal) protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 300 SPTLRMHEQSLITRETKYMCLKIF*KPSYKALVIVNLLE 184
           S  LR H + L TRET   C   F +  Y AL+  N+LE
Sbjct: 15  SGALRAHNEDLTTRET---CKAGFSEDDYTALISQNILE 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,962,090
Number of Sequences: 237096
Number of extensions: 1432190
Number of successful extensions: 2254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)