Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6140
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...    27   5.7  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   7.6  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 17   SNHHHSYLYHCQHYNSELP 73
            +NHH+S+ Y   HYN +LP
Sbjct: 1324 NNHHYSHNYSYPHYNIQLP 1342


>Z68302-7|CAH60770.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK792.4b protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 311 RGIIPLHLECMNNHL 267
           RG  PLHL  MNNHL
Sbjct: 299 RGNTPLHLAAMNNHL 313


>Z68302-6|CAA92635.2|  510|Caenorhabditis elegans Hypothetical
           protein ZK792.4a protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 311 RGIIPLHLECMNNHL 267
           RG  PLHL  MNNHL
Sbjct: 314 RGNTPLHLAAMNNHL 328


>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 414 YNYSPCFIDHSDEVSGG 464
           Y YS  F+D  DE+SGG
Sbjct: 200 YGYSVLFVDDCDEISGG 216


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   GTRNQTITIRIYTIVNITIPSCHFYILLII 95
           GT+N      +YTI+++TIP    Y+ ++I
Sbjct: 176 GTKNILCFSALYTILHMTIPITPVYVCILI 205


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  SNHHHSYLYHCQHYNSELP 73
           SNHHH + +H  H+ S LP
Sbjct: 675 SNHHHHH-HHSHHHASSLP 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,785
Number of Sequences: 27780
Number of extensions: 226537
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)