Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6137
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   3.1  
SPBP4H10.08 |qcr10||ubiquinol-cytochrome-c reductase complex sub...    26   4.1  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   5.4  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 200 CGLVLGP*LSNTFILWNLYQVSSSFLAVLLWEFSYLLLD 84
           C   + P +   FIL+N Y    S+ A+  W+  Y+LL+
Sbjct: 533 CFASIFPFIKQQFILFNDYSPMLSYEAIDYWKSLYILLN 571


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 82   KSNNKYENSHNSTARNDDETWYR 150
            KSN   +N  + T R D ETW++
Sbjct: 1434 KSNQMAQNGKHYTRREDKETWWK 1456


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 255 KREAK-QEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVA 431
           K+E+K Q    +  + LST   +   P  T     + S+    EC   K P   S + ++
Sbjct: 613 KQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSPPNNECFNDKEPDSSSSTLIS 672

Query: 432 LLKELCEEYKLPGVE 476
             +EL  EY+ P  E
Sbjct: 673 DRQEL--EYRNPNAE 685


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/95 (23%), Positives = 39/95 (41%)
 Frame = +3

Query: 156 EYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF 335
           +YE + +  P  Q T  F    +G+ V    R+K+    + ++A  +  + +G   P P 
Sbjct: 113 KYELIKK--PDGQFTL-FTVNTVGKEVQRKLRTKQ---LDLSKAESIISAVLGEEKPDPS 166

Query: 336 ATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLK 440
           +     P  +  +    SEGK     S     +LK
Sbjct: 167 SKVSNIPEENRDATSAISEGKETESVSLEETGVLK 201


>SPBP4H10.08 |qcr10||ubiquinol-cytochrome-c reductase complex
           subunit Qcr10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 79

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 195 PGVGALTEQHIHTLESVPSFIIISCSTVMGVFILVVRFLKLKT 67
           P +  +T +   T++++P+F   + + V GVF+  ++  K+KT
Sbjct: 15  PHISFITPER--TMKTIPAFSRWAFAAVAGVFVFAMQVPKVKT 55


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 338 SKWWGYTVTYCRKTQQHGTGCFL 270
           ++++ ++ +Y +K + HGTGC L
Sbjct: 242 NRFYHFSSSYLKKGEVHGTGCTL 264


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 366 NQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGV 473
           + S G       P+  +  Y ++LKELC  Y LP +
Sbjct: 85  SSSLGSHDSSSLPSSTNNRYSSVLKELCNTY-LPSI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,004
Number of Sequences: 5004
Number of extensions: 38283
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)