Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6137
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical pr...    34   0.076
U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine rec...    30   1.6  
U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium transp...    29   2.2  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    28   6.6  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    28   6.6  
U41508-8|AAG00026.4|  553|Caenorhabditis elegans Abnormal catech...    27   8.7  
U41508-7|AAP46273.2|  490|Caenorhabditis elegans Abnormal catech...    27   8.7  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical
           protein F55A4.5 protein.
          Length = 705

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
 Frame = +3

Query: 159 YECVAQSGPQHQATFEFRCKAL--GESVSASARSKREAKQEAAR-AMLLCLSTIGHRVPP 329
           +E + + GP H   +  RC  +  G  V A A  K + K+ A + A    L+T+ H  P 
Sbjct: 310 FEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKSAQQEACTQLLATVEHLTPE 369

Query: 330 --PFATEFTQPSHSNQSAGECSEGKAPTV--DSR---------SYVALLKELCEEYKLPG 470
             P A          + A    E K  T+  D +         + V+ L ++ +      
Sbjct: 370 NNPVALATNVCKTQKKLAAMNREPKRKTIVKDKKMDPLYGHQINPVSRLIQVTQAKSKEH 429

Query: 471 VEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAA 599
             + LVA+ G +  + F ++   G   ++  G  KR A++ AA
Sbjct: 430 PTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAA 472



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +3

Query: 417 RSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQK 593
           +S +  + E+    KL  V Y L  ++GPAH +LF+V+  +    + + SGT+ ++A+Q 
Sbjct: 77  KSAMCRVAEIARFNKLRHV-YNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQQA 135

Query: 594 AA 599
           +A
Sbjct: 136 SA 137



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 153 PEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPP 332
           P +E VA+ G      F  + K   +       +KR AK+ AA AML  +  +   +PPP
Sbjct: 430 PTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAAEAMLESIGFV-KPLPPP 488

Query: 333 FATEFTQPSHSNQSAGECSE--GKAPTVDSRS 422
             +   +    + S  E S   G  PT  S S
Sbjct: 489 GKSLLKKMIDCDPSLPEISHWTGPPPTAVSVS 520


>U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine
           receptor, class v protein17 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 25/32 (78%)
 Frame = -3

Query: 138 FIIISCSTVMGVFILVVRFLKLKTGTVKAKSL 43
           F++ SC T + ++ L+V+F+++++ TV +KSL
Sbjct: 179 FVVASCVTCLTLYGLIVKFIRMRSQTV-SKSL 209


>U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium
           transporter homolog protein1 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 153 ESVPSFIIISCSTVMGVFILVVRFLKLKTGTVKAKSLTIIKFLNLI 16
           E+V SF +  CS  + +F +   F  L+ G V++K+ T I   NL+
Sbjct: 27  ENVNSFFL--CSMALIIFFMQCGFAYLEAGAVRSKNTTNILIKNLL 70


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 120 STVMGVFILVVRFLKLKTGTVKAKSLTIIKFLNLIV 13
           S  +G+F+ ++R+L +K GT++   L++I    L V
Sbjct: 112 SAYLGMFLALLRYLVMKYGTIRKTFLSLIDCWKLFV 147


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 327 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 223
           G+H DLL ++     G+LP L P+ I +KQ  + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 327 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 223
           G+H DLL ++     G+LP L P+ I +KQ  + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916


>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 316
           CL  C + +G   G++ C A  +F+ R+
Sbjct: 23  CLICCEVADGHHFGAAACRACAAFFRRT 50


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 316
           CL  C + +G   G++ C A  +F+ R+
Sbjct: 24  CLICCEVADGHHFGAAACRACAAFFRRT 51


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 233 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 316
           CL  C + +G   G++ C A  +F+ R+
Sbjct: 25  CLICCEVADGHHFGAAACRACAAFFRRT 52


>U41508-8|AAG00026.4|  553|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 1, isoform a protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 195 PGVGALTEQHIHTLESVPSFIIISCSTVMGVF 100
           P +G LT +  +T+     F+I+ CST++  F
Sbjct: 176 PWIGPLTNRIGYTMPMFGGFVIMFCSTILFAF 207


>U41508-7|AAP46273.2|  490|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 1, isoform b protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 195 PGVGALTEQHIHTLESVPSFIIISCSTVMGVF 100
           P +G LT +  +T+     F+I+ CST++  F
Sbjct: 113 PWIGPLTNRIGYTMPMFGGFVIMFCSTILFAF 144


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 264  AKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSA 377
            AK+ A  A    LS +GH+ P P A + T P  +  +A
Sbjct: 1128 AKKPAPSASAHNLSALGHQKPGPTAPKVTAPKPTTSTA 1165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,222
Number of Sequences: 27780
Number of extensions: 230084
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)