Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6135
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    72   7e-15
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 71.7 bits (168), Expect = 7e-15
 Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
 Frame = +1

Query: 109 LPPYIEACEFS--NENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINI-DGNG- 276
           LP     C+ S   +   QCI E +  ++     G+    +   +P+ +D + I +  G 
Sbjct: 24  LPNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGS 83

Query: 277 --LKLTFTKALMHGL-KGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQI 447
             L+  +    ++GL K   +K + + +D    + + ++   +   A+Y+ +GK+L+L +
Sbjct: 84  VTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE-SYNPQVDFVADYKIEGKVLLLPV 142

Query: 448 KGKGDALINCVNVDVEIESKLNQVK-DNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNK 624
           +G G +  N    D++  + +   K + NG+ +L++   + K+   K     +NLF+GNK
Sbjct: 143 RGAGKS--NITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNK 200

Query: 625 ELADTTLQFANENWQQLMDDLAPPAIKQIVKTVVKAINKFFASV 756
           EL +   +F NEN + L  +L     +       K  N+ F  V
Sbjct: 201 ELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRV 244


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 734 IALTTVLTICLIAGGARSSM 675
           + +TTVLT+  I+ G RSS+
Sbjct: 276 LGITTVLTMTTISTGVRSSL 295


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 243 HWVRRRNVQFRNTLRKLRQTL 181
           HW+ R NVQ    L K   TL
Sbjct: 798 HWILRSNVQQCEQLEKAPNTL 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,869
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)