Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6133
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    42   7e-05
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   1.1  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   2.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   4.6  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   4.6  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.1  

>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +1

Query: 307 VVLNVYDMYW---TNWYTAGAGLGVFHSGVQVHGSEWAYGGHPY-AFTGVFEISPRDERE 474
           V +NVYD+      N      GLG++H+G+ + G E+A+G H     TGVF   PR   E
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 64  IISKLKKYFFLNNNYILLFIHVLCSQWRLH 153
           +++++ K F ++ N + +F+H L S + LH
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHYLPSYYHLH 244


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 405 FRSVNLNTAVEHTQTRAR-SVPIRPIHIVNVEDHGRL 298
           F+ + +NTAVE   TR+R S+ + P     +++ GRL
Sbjct: 712 FKYLTINTAVEQAATRSRLSLDLAPESSRTLQNLGRL 748


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  SRHVEDNCS*IISKLKKYFFLNNNYILLFIHV 129
           SR+ +  CS  +  L  Y    NN +++F+++
Sbjct: 54  SRYADGRCSAAMRSLSNYVLYKNNPLVVFLYL 85


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 367 PDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGT 236
           PD    C N+   Y+K      PV++E    ++  I   CK GT
Sbjct: 27  PDNSLLC-NACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGT 69


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 301 ATVVLNVYDMYWTNWY 348
           +T  +N +D+Y TNW+
Sbjct: 106 STACINFFDIYQTNWH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,962
Number of Sequences: 5004
Number of extensions: 45480
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)