Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6130
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    29   0.15 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   9.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.9  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -2

Query: 733 HNTPARNGSRLQTIPEPRHRTELYPD--LRSRDARVKKKTDSIDL---RDPNGLRRR--V 575
           H+ PA +G+   T PEP    +L+P+  ++ R +R++    S      RDP   R+R   
Sbjct: 40  HDEPAGHGTGNGTAPEPVTEDDLFPEEMVKRRTSRLQSLRSSFRTDRDRDPEQPRQRKPS 99

Query: 574 SRFECE 557
           +RF  E
Sbjct: 100 TRFNVE 105


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 507 EPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSM 614
           + R   GSK     S  + S+ E  RR+P    RSM
Sbjct: 106 DARPRFGSKAAAANSSATSSESEDERRTPPQDMRSM 141


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 378  FGHLVH-ALGRAAGGAKLPSAGLCLNASKA 464
            +  L+H A+G   GG  L   G CL   +A
Sbjct: 936  YSFLMHTAVGHGGGGQSLSGPGSCLEDFRA 965


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,095
Number of Sequences: 2352
Number of extensions: 15383
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)