Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6130
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    29   3.5  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    28   8.0  

>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 721 ARNGSRLQTIPEPRH--RTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 572
           ARNGSR+ T  E RH  + ++Y D  ++D  V    +++++      RRRVS
Sbjct: 228 ARNGSRVLTKREIRHDRQQQMYVD-GAKDVEVSSSEEALEVFCLGEERRRVS 278


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 378 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 557
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 558 SH--SKRETRRRSP 593
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 738 PSTTPPPGTEVVYRLFPSP 682
           P+ TPPP  + VYRL PSP
Sbjct: 482 PTPTPPPSPQPVYRL-PSP 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,865
Number of Sequences: 27780
Number of extensions: 360959
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)