Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6128
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.23 
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    28   0.41 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   3.8  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   5.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   6.7  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   8.8  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 17  NYNFAGLIFITRCYSFTVGKQS*KIGTRLRF---EYRCIAQHECTSTSYPLGHD 169
           N N +G IF++ CY + +GK S  I T   F    Y  IA+ E  S  +P  ++
Sbjct: 404 NTNVSGGIFMSTCYKYVLGKYS--IPTESCFIATPYSGIAEIEVHSLEHPANNE 455


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 237 KTYLKSRLRYGTGLVLSKSPR*NPVSYSFSESSITP 344
           K YL++  R GT   ++K PR   +SY  S +S TP
Sbjct: 190 KAYLQTTFRNGTMCDITKRPRHVILSYECSTNSDTP 225


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 208 YMTNRGFTFRKHI*NPV*D 264
           Y T+ G+TF+K+  NPV D
Sbjct: 202 YTTDGGYTFKKYSGNPVLD 220


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 35  LIFITRCYSFTVGKQS*KIGTRLRFEY 115
           L+F+  CYS T+ +Q      RLR EY
Sbjct: 270 LLFMKECYSRTITEQE---AARLRVEY 293


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 210 YDKSRLYIPKTYLKSRLRYGTGLVLSKSPR*NPVSYSFSESSITP 344
           YD+  L  P +YL S  +Y    V   +P   P  Y      +TP
Sbjct: 261 YDQKVLMPPASYLSSPNQYTLKNVSPGNPACPPFLYEHPNPQLTP 305


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 131 HECTSTSYPLGHDDFKMTFHVCWHSII*QIAALH--SENIFKIPSEIRN 271
           HECT   +    D  + T H+C    + +I +LH  +E  F +P+E+R+
Sbjct: 22  HECTIKIFRRSFDIARHTVHLC----VRKIFSLHPLTETDF-LPNELRS 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,444
Number of Sequences: 5004
Number of extensions: 32747
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)