Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6128
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    29   0.88 
01_01_1046 - 8246740-8247504                                           28   2.7  
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    27   6.2  

>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 164 GLTDKTYWCIRVERCTGIRILGGYQFFTIAFPR 66
           G T  TYWC R  R   I++  GY  F   F R
Sbjct: 579 GPTMGTYWCRRGRRYAHIQVRRGYPDFVFEFDR 611


>01_01_1046 - 8246740-8247504
          Length = 254

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 28  CGFDFYYTMLFLHRGKAIVKNWYPPKIRIPVHRSTR 135
           CG  F       H   A V  WY P +R+ +H   R
Sbjct: 44  CGVAFCSHCCRYHHRHAAVSRWYDPLLRVDLHGGGR 79


>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 185 FHVCWHSII*QIAALHSENIFKIPSEIRNRASVIKVTTVEP 307
           F +C H    ++ +LHSE   KIP++    A+ I + T  P
Sbjct: 550 FLICSHFYQYKVMSLHSEESIKIPTK-EEEATEIDIDTDAP 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,978,125
Number of Sequences: 37544
Number of extensions: 197240
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)