Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6128
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical p...    31   0.20 
Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical pr...    26   9.9  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    26   9.9  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    26   9.9  

>U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical
           protein C56C10.11 protein.
          Length = 753

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 136 MHQYVLSVRPRRL--QNDFPCMLA*H--YMTNRGFTFRKH 243
           +H YV+S+RP+ +  ++ F C+LA H  +M NR      H
Sbjct: 581 LHHYVISIRPKHVASESGFICLLARHLQWMANRSSALPAH 620


>Z68882-3|CAA93106.2|  568|Caenorhabditis elegans Hypothetical
           protein C47E12.3 protein.
          Length = 568

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 354 SDLEGLY*IH*TNSSR-GSTVVTLITLARFRISDGILNMFSECKAAICHIMLCQHTWK 184
           S LEG   I+    SR GST  T I   +   + G+L +  E   A+CH  L    WK
Sbjct: 328 SSLEGDIPIYVNVDSRDGSTSNTWIDSLQASFA-GVLVLAGEVDEAVCHHALYYAIWK 384


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 137 IRVERCTGIRILGGYQFFTIAFPR*RNNIV-**KSNPQNYNLRN 9
           +R E  TGI +L  ++  T+  P  RN+++   + NPQN N+++
Sbjct: 252 VRSEAQTGISLLQHHERPTVTAPLRRNDMMNSSRQNPQNGNVQD 295


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 137 IRVERCTGIRILGGYQFFTIAFPR*RNNIV-**KSNPQNYNLRN 9
           +R E  TGI +L  ++  T+  P  RN+++   + NPQN N+++
Sbjct: 252 VRSEAQTGISLLQHHERPTVTAPLRRNDMMNSSRQNPQNGNVQD 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,364
Number of Sequences: 27780
Number of extensions: 179940
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)