Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6127
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    36   0.045
01_01_0361 + 2838979-2841745,2841897-2842285                           29   3.9  
04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894...    28   6.8  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = -2

Query: 389 LKRENTAHEHTRQAPC-CN*CHYYILNFSI--MLISYI---HKM*YWCIVII*PPSFVYS 228
           +KR N  H   R APC  N  H+Y+L F    +L+S+I   HKM  W  V+    SF YS
Sbjct: 136 IKRANCYHSEGRDAPCDSNGEHFYMLLFGAAQLLLSFIPNFHKM-AWLSVVAAIMSFAYS 194


>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 685 CDHSLNVQNHQFRALVYDY 741
           C  S+N Q H+F+ALV++Y
Sbjct: 799 CCSSINPQGHEFKALVFEY 817


>04_04_0195 -
           23488490-23488891,23489016-23489243,23489348-23489481,
           23489685-23489899,23490049-23490142,23490293-23490526,
           23490643-23490736
          Length = 466

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -2

Query: 383 RENTAHEHTRQAPCCN*CHYYILNFSI--MLISYI---HKM*YWCIVII*PPSFVYS 228
           R N  H H   APC     YY+L F    + +S+I   H M  W  V+    SF YS
Sbjct: 145 RSNCYHTHGHDAPCKYGGSYYMLMFGAAQLFLSFIPDFHDM-AWLSVLAAVMSFSYS 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,441,412
Number of Sequences: 37544
Number of extensions: 310715
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)