Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6127
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 546 WIKIVTAVCDFAAPF*NCLWFCLCCSYITNCINYYELVFRLFQFVCS*IGLEI 388
           WI  + AV DFA      +   L C +I   IN     +RL +F    I L++
Sbjct: 110 WIPCIPAVNDFALEIVTIISIILHCLWIIAIINALRYTWRLRRFASHEIRLDL 162


>Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical
           protein T18D3.3 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 239 FVYSQPNAVQITTLCLIV*S*HLCCSS--MTRKIIICVITGARTTCESARVGATTLPVSA 66
           F+Y QP+ V I  +C +V S  + C++  + R  +I ++ G  +  + A+V ++   +  
Sbjct: 228 FIYFQPSWVIIDPICTLVFSVIVLCTTIYILRDAMIVLLEGRPSNIDFAKVFSSLEDIEG 287

Query: 65  AKQ 57
            K+
Sbjct: 288 VKK 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,986
Number of Sequences: 27780
Number of extensions: 292516
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)