Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6123
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 225 2e-59
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 214 7e-56
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 8e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 1e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 47 2e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.031
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.3
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 225 bits (551), Expect = 2e-59
Identities = 104/192 (54%), Positives = 136/192 (70%)
Frame = +2
Query: 152 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 331
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 332 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 511
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 512 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 691
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 692 SGDRASFSKVVE 727
D+++ +K+VE
Sbjct: 210 PEDKSALNKLVE 221
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 214 bits (522), Expect = 7e-56
Identities = 104/192 (54%), Positives = 136/192 (70%)
Frame = +2
Query: 152 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 331
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 332 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 511
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129
Query: 512 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 691
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 189
Query: 692 SGDRASFSKVVE 727
D+++ +K+VE
Sbjct: 190 PEDKSALNKLVE 201
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 8e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 152 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 331
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 332 KTTAKGLFKILEKYRPET 385
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 1e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +2
Query: 152 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 331
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +2
Query: 473 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 640
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/95 (22%), Positives = 44/95 (46%)
Frame = +2
Query: 470 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 649
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 650 HRKTCTCLALTNVESGDRASFSKVVEPSRRTSTSA 754
+ + L + + +V E R + A
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALRHLTVEA 162
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 427 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 308
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 300 LRSTNLPRHWTRLQLRA 350
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 250 PHPASEGCTSASSESAPSDQPIYPDTG 330
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 250 PHPASEGCTSASSESAPSDQPIYPDTG 330
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,253
Number of Sequences: 27780
Number of extensions: 303769
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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