Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6119
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0632 - 4647271-4648704 31 1.2
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 30 2.1
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 29 3.6
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 29 3.6
09_02_0368 - 7984894-7984905,7985250-7985301,7985947-7985969,798... 28 6.3
01_05_0586 + 23443371-23444645 28 6.3
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 8.3
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 28 8.3
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 28 8.3
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 28 8.3
>03_01_0632 - 4647271-4648704
Length = 477
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 315 PSWTARGIEASC-DSSRIHG*TSRSLHGEGACHGLCKTNSP 434
PS TA GI+ DSS HG SR LHG CH + P
Sbjct: 375 PSPTASGIKLDMEDSSSSHG--SRELHGLIKCHSEARVKPP 413
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Frame = -3
Query: 301 PAPFAHAKRSRQCSSMKMLLEHTRWYGLR-----EICSECSWCNQMVVRKA 164
P PF R R+C +K L H RW + S WC V A
Sbjct: 308 PDPFLEWLRRRECKDLKRTLVHGRWKATTWRMPIPVTSWDDWCRDCAVESA 358
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 523 AITFSFQNPLNVQLTDCYFTFEGPGVQ 603
A+ +FQ+PL + TD Y TFEG V+
Sbjct: 289 ALLAAFQDPLPIPQTDSYGTFEGAFVK 315
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 579 EVTVGQLDIQWVLETEGDCAFLTYARLASHLHLHAWLVQREVIFIRPSLASLFYISHGMH 400
E T +++++W L+T G Y + L AWLV R ++FI + S M
Sbjct: 127 ETTTPEINLRWFLDTAGLKKSSAYL-VNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQ 185
Query: 399 LH 394
+H
Sbjct: 186 MH 187
>09_02_0368 -
7984894-7984905,7985250-7985301,7985947-7985969,
7987006-7987071,7987155-7987206,7987617-7987820,
7987937-7988017,7988103-7988236
Length = 207
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 625 RDVKPGEFVNYQDKFVAAAPGRAPHCG 705
RD+K GE + Y KFV + HCG
Sbjct: 59 RDIKTGEELTYDYKFVQFGADQDCHCG 85
>01_05_0586 + 23443371-23444645
Length = 424
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 238 VLTASSCYYTGAIASRVRRAQG 303
VL + CYYTG + R RA G
Sbjct: 74 VLVGAVCYYTGTLIERCMRADG 95
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 538 FQNPLNVQLTDCYFTFEGPGVQRPRQIRFR 627
F P V +T C+ F P +QR +IR R
Sbjct: 741 FDRPKEVVITKCFHLFCSPCIQRNLEIRHR 770
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 129 LKVAVWVLIVLLQALVSAARGNDSETLG*RAV 34
L+VAVWV +V+ LV A N + +LG +A+
Sbjct: 92 LQVAVWVCMVMSVMLVVEATFNSAVSLGVKAI 123
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = +1
Query: 226 TIWCVLTASSCY-YTGAIASRVRRAQGEFIVRAGQREVLKLHVTPQEYMDKLVDHSMVKV 402
TI C++ A+ + + + V Q A E LKL QEY + H+ V
Sbjct: 171 TIICLMAATPLHRHAKVVRMVVSTYQAASGAGAAAMEELKLQT--QEYAFNIFSHNAPIV 228
Query: 403 H------AMAYVKQTRQAWSDED 453
M VK+TR+ W+D+D
Sbjct: 229 ENGYNEEEMKMVKETRKIWNDKD 251
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -3
Query: 259 SMKMLLEHTRWYGLREICSECSWCNQ 182
S M++ +W+ +RE+ E S+C++
Sbjct: 333 SASMIVTENQWFNIREVSPEWSYCSE 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,781,231
Number of Sequences: 37544
Number of extensions: 510595
Number of successful extensions: 1173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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