Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6119
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    36   0.037
U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine rece...    30   1.9  
AF016424-9|AAB65327.2|  530|Caenorhabditis elegans Udp-glucurono...    28   5.7  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U80842-12|AAB37942.1|  139|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z77657-4|CAB01148.2|  376|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 463 TGSHLHQTKPGEFVLHKPWHAPSPWSDLLVYPCIL 359
           TG H+H  K  E +L KPW+  +P+   ++  CIL
Sbjct: 528 TGDHVHDDKLVEIILSKPWNQMAPYMMGMIAGCIL 562


>U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 5 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 195 HGAIKWLSVRHYVNIHEVEIHILKVAVWVLIV 100
           +G  +WL+ R   N++ V +H+    +W+L++
Sbjct: 75  YGPCQWLTDRTCFNLYSVLVHVYTHTIWLLLI 106


>AF016424-9|AAB65327.2|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein61 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 558 DIQWVLETEGDCAFLTYARLASHLHLHAWLVQREVIFIRPSLASLFYISHG 406
           D Q+V+  EGD       RL  ++HL  WL Q++++    + A   +I+HG
Sbjct: 331 DYQFVMRYEGDDL---KDRLPENVHLSKWLPQKDLLLHEKTKA---FITHG 375


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
            F57C7.4 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 50   SVSLSLPLAADTNACNSTMSTQTATLRMCISTSWILT*CLTDNHLIAP*TFRTNLTKTVP 229
            +++ S   A+  ++ N    T +    +C+ T+WI    L DN  +A   F + +  +V 
Sbjct: 1062 NITFSSYFASSYSSWNCGSGTSSTCRYVCLGTAWISNQALGDNSYLAEALFLSYIQLSVN 1121

Query: 230  SGVF*QHLHATTL 268
              V    LH  +L
Sbjct: 1122 KSV--SDLHQLSL 1132


>U80842-12|AAB37942.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC239.3 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 256 MKMLLEHTRWYGLREICSEC 197
           +KMLL+   +Y L E+C +C
Sbjct: 77  LKMLLDEAEYYELTELCDDC 96


>Z77657-4|CAB01148.2|  376|Caenorhabditis elegans Hypothetical
           protein F08H9.6 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 493 RSQPCVGQECAITFSFQNPLNVQLTDCY 576
           +++P V  +C +TF    P  +Q+T CY
Sbjct: 109 KNEPSVNGDC-VTFKGATPFGLQVTQCY 135


>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 225 TVFVR-FVLNVHGAIKWLSVRHYVNIHE---VEIHILKVAVWVLIVLLQAL 85
           T+F+R F+  +   +  L +      HE   ++ HI++V+ W+ +++ Q L
Sbjct: 224 TIFIRCFLSGLSVHVPLLVIARTTEGHELIAIKDHIIRVSYWIFVIIFQPL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,908
Number of Sequences: 27780
Number of extensions: 412419
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)