Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6118
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 313 9e-86
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 301 2e-82
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 291 4e-79
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.0
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.4
07_03_1509 - 27246721-27247350 29 3.2
07_03_0604 + 19903654-19904598 29 4.2
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.6
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 5.6
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 28 5.6
06_03_0232 - 18507872-18508792 28 7.4
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.7
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 9.7
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.7
08_02_0567 + 18769742-18769790,18769928-18771351 27 9.7
06_02_0084 - 11547820-11548773 27 9.7
03_06_0303 - 32994697-32994831,32994959-32995096,32995205-329952... 27 9.7
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 9.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 313 bits (768), Expect = 9e-86
Identities = 142/198 (71%), Positives = 163/198 (82%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 380
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 381 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 560
KPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 561 FEKLREEGRLANDGCIVQ 614
+ KL+ EGR+ +DG Q
Sbjct: 181 YVKLKAEGRIMSDGVNAQ 198
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 301 bits (740), Expect = 2e-82
Identities = 135/190 (71%), Positives = 157/190 (82%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 392
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 393 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 572
T ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKL 491
Query: 573 REEGRLANDG 602
+ EGR+ DG
Sbjct: 492 KSEGRIVPDG 501
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 291 bits (713), Expect = 4e-79
Identities = 131/187 (70%), Positives = 152/187 (81%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 401
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 402 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 581
RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ E
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSE 183
Query: 582 GRLANDG 602
GR+ DG
Sbjct: 184 GRIMPDG 190
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 424 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 332
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 159 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 263
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 412 LDNPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 540
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 633 SMFPGGTARCSRHWRGGPLHAASQTHH 553
S PGG R R G P+H A + HH
Sbjct: 77 SKAPGGRRRRPRRVEGAPVHRARRLHH 103
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 378 GKPQGTVARVRIGQPIMSVRSSD 446
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 144 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 236
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 635 VPCFRAVLHDAAVIGEAALFTQLLKLITFIL 543
+PC R+VLH VI A L +L+ +L
Sbjct: 288 LPCIRSVLHSTCVISAMAAAAALNRLLPLVL 318
>06_03_0232 - 18507872-18508792
Length = 306
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 442 VTGGRHRSSRLCAVPSSSSPDVKRSTYQRS-GVSQSMNVMSLRSC-VKRAASPMTAASCS 615
+ GRH R A P SSSP + RS S G+S S + S S +K+A +
Sbjct: 133 IKDGRHNPFRPRA-PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAK 191
Query: 616 TARK 627
TA+K
Sbjct: 192 TAKK 195
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 250 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 149
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 507 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPETWNL 638
+KIY S WGFT E++ + +E + I + +PE L
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPEILEL 45
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 378 GKPQGTVARVRIGQPIMSVRSSD 446
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 363 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 515
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 327 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 455
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>03_06_0303 -
32994697-32994831,32994959-32995096,32995205-32995282,
32995399-32995475,32996355-32996676,32996756-32996986
Length = 326
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 487 SSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTA-RKHGTSRTL 648
SSS+P ++R Q + V+ + + + + V ASP+ AA+ + R+ S+T+
Sbjct: 15 SSSAPVLRRCVAQPARVAAARRLAAAAASVALEASPVPAAAAAAVERRMSVSQTM 69
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 162 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 46
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,898,097
Number of Sequences: 37544
Number of extensions: 488258
Number of successful extensions: 1495
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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