Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6116
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.98 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.0  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   5.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 338 QIFYGLFTNSNVVILAQVKLGFYCLFG*SRKTVKKL 231
           QI  G+ + + V  +  +K+  YCLFG S  T  ++
Sbjct: 516 QIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRM 551


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 423 EINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELAN 536
           E+NV   SL + LK+     +SG+  Q  Q    EL++
Sbjct: 92  EVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSH 129


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 60  KGHKKMAGDNIEKLYK 107
           K H+K+ GDNI+ + K
Sbjct: 17  KRHRKVLGDNIQGITK 32


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 DLTKRNVWHLNSLRSFLTVFLLYPN 264
           +LTK + W L+ +++ +  +L+  N
Sbjct: 272 ELTKIDKWFLHKMKNIIDYYLVLEN 296


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 320 TSHKRFASFMQRAQRTH 370
           TSHKR++   +R Q+++
Sbjct: 267 TSHKRYSRSREREQKSY 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,128
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)