Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6115
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.3  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   2.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   4.0  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    26   5.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   7.0  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    26   7.0  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 88  SKPWLITSYHNSRLV*W 138
           ++PW++TS HN R+  W
Sbjct: 22  TQPWILTSLHNGRIQLW 38


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 151 SLHKGVAGSNPAKGRYLYDKYKCLFQGYGCILNICMCIIKILHLY 285
           SLH G A        +++ +Y+  F GY  +L +C C + + H Y
Sbjct: 253 SLHAGWAMLEALFLSHVFPRYRFCFYGY--VLWLCWCTMYLTHHY 295


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 163 GVAGSNPAKGRYLYDKYKCLFQGYGCILNICMCIIKILHLYPLSGTCNTSSLRTY 327
           GV   +  K   LYD  +C      C  +I   I K L L P  GTC    LRTY
Sbjct: 627 GVIAFHGLKESVLYDIARC------CRADIISSIDK-LSLCPRLGTCGRFQLRTY 674


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 630 GTGAVKFS*KFRWRDSGFIFPFILFSDSNHY 722
           GTG V FS   +   + +IFP +L + S+H+
Sbjct: 43  GTGEVLFSGLIKQMANFYIFPLLLEARSDHF 73


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 696 ILFSDSNHYLIYTYTLINSGQLRLFSL 776
           +LF  ++   IY Y L +SG L  FSL
Sbjct: 309 VLFGHNDIDTIYVYILTHSGTLETFSL 335


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 HVLPQQPSGIVVSDMVTTQGGRGFKSR 185
           H+L  QPSG+V+  + T+ G R   +R
Sbjct: 143 HLLEFQPSGLVLEYLGTSMGSRSQSAR 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,725
Number of Sequences: 5004
Number of extensions: 68080
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)