Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6115
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0194 + 13645418-13645790,13645879-13647653                       32   0.44 
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065...    29   4.1  
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    28   7.2  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    28   9.6  

>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 205 DKYKCLFQGYGCILNICMCIIKILHLYPLSGTCNTSSLRT 324
           DKY  LF G  C+ N   C++    L P+ G  NTSS+ T
Sbjct: 79  DKYYNLFHGLECVDNRAFCLLLWAALLPMVG-MNTSSILT 117


>07_03_0536 -
           19205515-19205686,19205807-19205931,19206428-19206554,
           19206653-19206777,19207616-19207708,19207779-19208052,
           19208138-19208269,19208391-19208470,19209049-19209117,
           19209227-19209343,19209416-19209484,19209839-19209892,
           19210012-19210049,19211243-19211354,19211497-19211619,
           19211728-19211755,19212048-19212104,19212984-19213028,
           19213340-19213361,19213817-19213844,19214338-19214418
          Length = 656

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 489 IINHKTIINSRNGPCDYIRYVNKKP*IKFSSGCFNSEDGRTYIMALYGTGAVK 647
           ++ H+ + N+R  P   +  + ++P     S    +++GRT++    GTG +K
Sbjct: 288 LLKHRFVRNARKSP-KLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIK 339


>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 265 IKILHLYPLSGTCNTSSLRTYHGTS*RGV 351
           IK+LHL+PL+  C+      +HG   R V
Sbjct: 665 IKVLHLHPLTWACDLVDPSRWHGEEPRPV 693


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 220 DIYIYHTNIFPWRDLNPRPPCV 155
           D++++  + F W ++ PRP C+
Sbjct: 210 DLHVFDLDNFKWEEIKPRPGCL 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,234
Number of Sequences: 37544
Number of extensions: 389151
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)