Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6115
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin...    28   6.5  

>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 718 WLLSENKINGKINPESRQRNFHENFTAPVPYNAII*VRPSSELKH 584
           +L   + +NG +   SRQ +FH N+T+PVP       R SS ++H
Sbjct: 100 FLADVSDMNGTVR--SRQASFHFNYTSPVPAEK---TRRSSGIQH 139


>Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical
           protein ZK1010.6 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 615 IMALYGTGAVKFS*KFRWRDSGFIFPF 695
           + A Y TG V  S   +W+D G I+P+
Sbjct: 312 LCAHYSTGVVVLSMLSKWKDRGMIYPY 338


>AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin
           protein 3 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 730 YIK*WLLSENK--INGKINPESRQRNFHENFTAPVPYNAI 617
           Y+K +LL + K  +  K+  +S    F+E+FT  +P+N I
Sbjct: 54  YVKLFLLPDKKKKLQTKVQRKSLNPVFNESFTFKIPFNEI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,644
Number of Sequences: 27780
Number of extensions: 370242
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)