Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6112
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 68 8e-13
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 31 0.083
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.44
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 1.8
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.1
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 5.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 7.2
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 7.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.5
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 68.1 bits (159), Expect = 8e-13
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQ 450
+CRY ++DFE+ + +G + K+ +SW PD +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 451 KYIQATDLSEASQEAVEEKL 510
IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 31.5 bits (68), Expect = 0.083
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 334 SKKQKLFLMSWCPDTDKVKKKMLYSSS 414
SKK L L+S+ P+ V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +1
Query: 346 KLFLMSWCPDTDKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 498
K+ + CP VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 322 TSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 501
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 502 EKL 510
E L
Sbjct: 138 EFL 140
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 412 SFDALKKSLVGVQKYIQATDLSEASQ 489
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 3.1
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +1
Query: 292 DFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQKYIQATD 471
+F+ Q T A+K + P T K + ++ A KK + G +KY +
Sbjct: 120 NFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVIN 179
Query: 472 LSEASQEAVEEKLRATDRQ*TAFT 543
S + E K R DR + FT
Sbjct: 180 DSNVENKE-ETKDRNLDRALSKFT 202
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 20 CRCRGVGEVSGVIFT*ITSKNGV 88
CRC G+ ++SG I + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 334 SKKQKLFLMSWCPDTDKVKKKMLYS 408
+KK+K +SW PD D V+ K + S
Sbjct: 500 NKKRKKKSVSWKPDNDLVQVKFIES 524
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 311 WCVYSKSNRPYLHSPVPPLLQILEELFVFGVAFANRLDVD 192
W + + P+ + PLL + LFV G A N +DVD
Sbjct: 62 WLFRNAAISPFTEEMLGPLLPTCK-LFVTGAAGYNNVDVD 100
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 365 HDIRKSFCFLLASDVPWHWCVYSKSNRPYLHSP 267
HD+ +++ S +H C ++S P+ H P
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHP 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,036
Number of Sequences: 5004
Number of extensions: 36212
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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