Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6112
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 64 5e-11
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 64 5e-11
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 60 1e-09
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 60 1e-09
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 58 5e-09
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 30 0.94
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68879-8|CAE17858.1| 93|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 2.9
Z46828-5|CAA86861.3| 596|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical ... 28 5.0
Z82286-4|CAB05310.1| 468|Caenorhabditis elegans Hypothetical pr... 27 6.6
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 27 6.6
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 27 6.6
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 27 6.6
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 27 8.7
AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical ... 27 8.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 64.5 bits (150), Expect = 5e-11
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQ 450
ECRY D E T Q QG S K+ + +CPD V+++MLY+SS ALK SL G++
Sbjct: 66 ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124
Query: 451 K--YIQATDLSEASQEAVEEKLRATDR 525
+QA+++S+ +++V+ L + R
Sbjct: 125 SLFQVQASEMSDLDEKSVKSDLMSNQR 151
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 81 MASGVTVSDACKTTY*GRSSKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQQ 257
MASGV V +CK Y +K + H Y++F I +++ I VE VGE+NA Y +F+E++++
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQ-HSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 64.5 bits (150), Expect = 5e-11
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQ 450
ECRY D E T Q QG S K+ + +CPD V+++MLY+SS ALK SL G++
Sbjct: 66 ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124
Query: 451 K--YIQATDLSEASQEAVEEKLRATDR 525
+QA+++S+ +++V+ L + R
Sbjct: 125 SLFQVQASEMSDLDEKSVKSDLMSNQR 151
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 81 MASGVTVSDACKTTY*GRSSKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQQ 257
MASGV V +CK Y +K + H Y++F I +++ I VE VGE+NA Y +F+E++++
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQ-HSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSL-VGV 447
+CRY +FDF++T G SK K+ + CPD +KKKM+Y+SS A+K SL G
Sbjct: 79 DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137
Query: 448 QKYIQATDLSEASQEAVEEKL 510
Q +D SE S + + KL
Sbjct: 138 ILQFQVSDESEMSHKELLNKL 158
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 81 MASGVTVSDACKTTY*GRSSKDKKHRYVVFYIRDEKQIDVE 203
M+SGV V +T++ S K++RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSL-VGV 447
+CRY +FDF++T G SK K+ + CPD +KKKM+Y+SS A+K SL G
Sbjct: 79 DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137
Query: 448 QKYIQATDLSEASQEAVEEKL 510
Q +D SE S + + KL
Sbjct: 138 ILQFQVSDESEMSHKELLNKL 158
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 81 MASGVTVSDACKTTY*GRSSKDKKHRYVVFYIRDEKQIDVE 203
M+SGV V +T++ S K++RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 57.6 bits (133), Expect = 5e-09
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 271 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSL-VGV 447
+CRY +FDF++T G SK K+ + CPD +KKKM+Y+SS A+K SL G
Sbjct: 79 DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137
Query: 448 QKYIQATDLSEASQE 492
Q +D SE S +
Sbjct: 138 ILQFQVSDESEMSHK 152
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +1
Query: 310 QCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 483
Q SE S K+ L++ CPD V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 484 SQEAVEEKLRATDR 525
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 81 MASGVTVSDACKTTY*GRSSKDKKHRYVVFYIRDEKQIDVE 203
M+SGV V +T++ S K++RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 328 PTCPGTGACIQSQTGHICIPRYRPCCRSSRNCSYSALRSPTVSTSICFSSRM*KTT*RC 152
P C + C+Q C P+ C + ++ PT S++ C SS M + T +C
Sbjct: 274 PACQSS--CVQQACAPACQPKCSSQCVEQQQAQIVVVQPPTSSSNNCASSCMPQCTPQC 330
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 483 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLDLV 379
RF E+G++D+ NS G+ + ++ V +LLD +
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLDSI 1862
>Z68879-8|CAE17858.1| 93|Caenorhabditis elegans Hypothetical
protein K08F4.12 protein.
Length = 93
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 358 MSWCPDTDK-VKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 510
+ W D D+ V+ + + SS+ + LKKS +K +Q + S ++ +EK+
Sbjct: 7 VQWADDDDETVENQKISSSNSECLKKSNSITKKLVQVRNYSGYAESHADEKI 58
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 313 CQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 492
C+ S+ + L+ +CP+ + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 493 AVEEK 507
+E K
Sbjct: 133 LLESK 137
>Z46828-5|CAA86861.3| 596|Caenorhabditis elegans Hypothetical
protein R03D7.8 protein.
Length = 596
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 322 TSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKS 435
T + K+ +L+S PD DKVK + S S + KS
Sbjct: 228 TGRLTVKETAYLLSQLPDQDKVKYSRMKSVSTEESSKS 265
>AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical
protein T22D1.8 protein.
Length = 400
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 304 CIQSQTGHICIPRYRPCCRSSRNCSYSALRSPTVSTS 194
C+ +++ + IP Y CRS+R + +R P+VST+
Sbjct: 286 CLYTRSRSLSIPVYS--CRSARYAACMDIRDPSVSTT 320
>Z82286-4|CAB05310.1| 468|Caenorhabditis elegans Hypothetical
protein W02A2.7 protein.
Length = 468
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 223 PNTNSSSRIC---SKGGTGECRYGLFDFEYTH 309
PN +++C ++GGTG C YGL E+ H
Sbjct: 311 PNNKYKTKLCKNFARGGTGFCPYGL-RCEFVH 341
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 523 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 431
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 523 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 431
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 523 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 431
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 298 QSQTGHICIPRYRPCCRSSRNCSYSALRSP-TVSTSIC 188
Q+Q + C+P +P C+SS SY+ +S + +T+ C
Sbjct: 303 QAQPINQCVPACQPACQSSCTASYTNQQSQHSSATTSC 340
>AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical
protein ZK993.2 protein.
Length = 903
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 280 YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTDKVKKKMLYSSSFDALKKSL-VGVQK 453
YG FD+E + + K+++L ++ D +K K +LK ++ G+QK
Sbjct: 750 YGEFDYEIAEKMENFESEFKEKQLVVLEVDDDFEKFYKHQALLEELQSLKTAMDSGMQK 808
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,938
Number of Sequences: 27780
Number of extensions: 215902
Number of successful extensions: 798
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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