Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6111
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   1.7  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   2.9  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   3.8  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   5.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   6.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   6.7  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    24   6.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    23   8.8  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 180 PRPVSHKNRATGPKWHSNTDVT*GN*PEKSSGTLASSNRQQYSSAG 317
           P+ VS K    G   H N +   GN  +  S +  SSN++  SS G
Sbjct: 388 PKAVSQKTNVDG---HRNHEAKHGNTVQNESKSQKSSNKEGRSSRG 430


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 PRPVSHKNRATGPKWHSNTDVT*GN*PEKSSGT 278
           P+P   KN++  PK H   D+   +   KS+ T
Sbjct: 166 PKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +2

Query: 20  FTERSSCLIIFVFVEIQCCQM*FYVLKKSNSCGQWSRNQNKVF 148
           F +  S  ++ + + +  C + F+      +C +W  N  K+F
Sbjct: 172 FGDLLSAKLVPLDIALSICSLQFFRSLGDTTCSEWIANLEKIF 214


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 224 PFRAGRPVLVRDRPWEVT*LITQSMQ 147
           PF++    +++D PW +T  + Q++Q
Sbjct: 466 PFKSNIFYVLKDVPWSITKYLPQALQ 491


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 TKTKCLHGLSDQLCYLPRPVSHKNRAT 212
           TKTK  +  +D++ +L   +SH    T
Sbjct: 547 TKTKITNSYTDKILFLGTNISHSKNVT 573


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 QGDRPEMAFQHRRDVRELTREIIRDSRVI*QTTVLIC 313
           Q DR ++ F +    R   RE++RD   + +T + +C
Sbjct: 691 QWDRKKLTFYYHAKQRIDFRELVRDLFKVYKTRIWMC 727


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   LVPRIPFTERSSCLIIFVFVEIQCCQM 82
           ++  +PF +  SC+ +F+    + C+M
Sbjct: 71  VIVNLPFKQLESCIPMFLINHFKTCEM 97


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 247  EGIDPRNHQGLSRHLTDN 300
            +G+DPRN + + RH+ ++
Sbjct: 987  QGMDPRNERVVHRHIVNS 1004


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,358,217
Number of Sequences: 5004
Number of extensions: 25509
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)