Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6111
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0241 - 19235966-19236293,19236432-19236901,19236926-19237273     27   2.6  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    27   2.6  
05_01_0260 - 1993075-1994312,1996249-1997191                           27   4.6  
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598     27   4.6  
05_04_0151 + 18485095-18485766                                         26   6.1  
10_08_0271 - 16382655-16384451                                         26   8.0  
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370...    26   8.0  

>03_04_0241 - 19235966-19236293,19236432-19236901,19236926-19237273
          Length = 381

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 222 ISGRSPCSCERPAVGGNIVDHSIHANTLFWF 130
           IS   PC  E   V G+IV H I+ + +++F
Sbjct: 230 ISATRPCIDETYLVQGHIVKHGINGSLIYFF 260


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 102 NLTVVVSGPETKTKCLHGLSDQLCYLPRPVSHKNRATGPKW 224
           N +++ SG   K+   H +  Q  Y+ R   HK+   G KW
Sbjct: 290 NSSLLSSGSRDKSILHHDIRAQDDYISRLAGHKSEVCGLKW 330


>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 246 TSRRCWNAISGRSPCSCERPAVGGN 172
           T+  C+NA +G   CSC      GN
Sbjct: 279 TNTNCFNATNGGYYCSCRNDVTDGN 303


>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
          Length = 537

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 11  RIPFTERSSCLIIFVFVEIQCCQM*FYVLKKSNSCG 118
           R+PF  + +C    +F  + C Q+  Y L ++ + G
Sbjct: 32  RVPFRRKLACTAAALFAFLACSQLPLYGLHRAAAAG 67


>05_04_0151 + 18485095-18485766
          Length = 223

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 219 SGRSPCSCERPAVGGNIVDHSIHANTLFW 133
           +G SPC C  P  G      +  A  +FW
Sbjct: 3   NGMSPCLCSPPVHGEEAAAEAAAARLVFW 31


>10_08_0271 - 16382655-16384451
          Length = 598

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 285 TRESLMISRVNSLTSRRCWNAISGR 211
           TR+++ +  V+ +TSR  W A+ GR
Sbjct: 274 TRDAMALEVVDIITSRSEWRAMGGR 298


>05_03_0369 -
           13136146-13136175,13136237-13136908,13136926-13137016,
           13137184-13137416,13137459-13137731,13137877-13138265,
           13138325-13139156,13139847-13139922,13140027-13140414,
           13141395-13141748,13142069-13142333,13143366-13143716
          Length = 1317

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 111 VVVSGPETKTKC--LHGLSDQLCYLPRPVSHKNRATGPKWHSNT 236
           V V G E  TKC   HG    L  L RP S   + TGP+  +NT
Sbjct: 311 VEVIGQEIATKCGDSHG-HRTLEGLARPKSPDYKQTGPQTRTNT 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,722
Number of Sequences: 37544
Number of extensions: 176224
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)