Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6111
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    29   0.60 
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    29   0.60 
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    29   0.60 
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    29   0.60 
U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    27   3.2  
AF039719-5|AAB96755.1|  699|Caenorhabditis elegans Blistered cut...    27   3.2  
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    26   7.4  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     26   7.4  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     26   7.4  
AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.    26   7.4  
AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like ...    26   7.4  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 PSRHVGVGMPFRAGRPVLVRDRPWE 177
           PS  +G  MP    +PV+  D PW+
Sbjct: 503 PSAEIGFAMPMDLKQPVVTSDHPWQ 527


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 PSRHVGVGMPFRAGRPVLVRDRPWE 177
           PS  +G  MP    +PV+  D PW+
Sbjct: 526 PSAEIGFAMPMDLKQPVVTSDHPWQ 550


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 PSRHVGVGMPFRAGRPVLVRDRPWE 177
           PS  +G  MP    +PV+  D PW+
Sbjct: 487 PSAEIGFAMPMDLKQPVVTSDHPWQ 511


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 PSRHVGVGMPFRAGRPVLVRDRPWE 177
           PS  +G  MP    +PV+  D PW+
Sbjct: 503 PSAEIGFAMPMDLKQPVVTSDHPWQ 527


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 PSRHVGVGMPFRAGRPVLVRDRPWE 177
           PS  +G  MP    +PV+  D PW+
Sbjct: 526 PSAEIGFAMPMDLKQPVVTSDHPWQ 550


>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 174 YLPRPVSHKNRATGPKWHSNTDV 242
           Y+PR  S  NR  GPK H++  +
Sbjct: 12  YVPRKCSSSNRIIGPKDHASVQI 34


>AF039719-5|AAB96755.1|  699|Caenorhabditis elegans Blistered
           cuticle protein 4, isoforme protein.
          Length = 699

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 270 MISRVNSLTSRRCWNAISGR-SPCSCERPAVGGNIVDHSI 154
           ++SRV+ LTS+ C+N  + + + C C R    G I++  I
Sbjct: 647 VLSRVHQLTSQLCFNFENSQPTECVCLRVCEPGVIINFQI 686


>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
           protein K02A2.3 protein.
          Length = 1020

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 222 ISGRSPCSCERPAVGGNIVDHSIHANTLFWF 130
           + G   C+ +   +  +IV H IH N   WF
Sbjct: 256 MEGMKVCAIDNHLLQSSIVTHPIHKNQTSWF 286


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 273 LMISRVNSLTSRRCWNAISGRSPCS 199
           L ++  NS+  RRCW+    R PCS
Sbjct: 119 LHVTTANSIFLRRCWDKYR-RGPCS 142


>Z92807-2|CAD21652.1|  689|Caenorhabditis elegans Hypothetical
           protein K11D9.1b protein.
          Length = 689

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = +2

Query: 173 LPPTAGLSQEQGD-------RPEMAFQHRRDVRELTREIIRDSRVI 289
           LPP+A  S E+ D          +A  H R++++++ +IIR++ ++
Sbjct: 610 LPPSADKSDEEYDEMVEKQEHRRVAVDHVRNLKDMSEKIIRETTIV 655


>Z92807-1|CAB07264.1|  747|Caenorhabditis elegans Hypothetical
           protein K11D9.1a protein.
          Length = 747

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = +2

Query: 173 LPPTAGLSQEQGD-------RPEMAFQHRRDVRELTREIIRDSRVI 289
           LPP+A  S E+ D          +A  H R++++++ +IIR++ ++
Sbjct: 668 LPPSADKSDEEYDEMVEKQEHRRVAVDHVRNLKDMSEKIIRETTIV 713


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 267  ISRVNSLTSRRCWNAI--SGRSPCSCERPAVG 178
            +++V  L+S R   +I   G+SPCSC+  A G
Sbjct: 1311 LNQVRKLSSDRSTFSILTGGKSPCSCDVAACG 1342


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 267  ISRVNSLTSRRCWNAI--SGRSPCSCERPAVG 178
            +++V  L+S R   +I   G+SPCSC+  A G
Sbjct: 1253 LNQVRKLSSDRSTFSILTGGKSPCSCDVAACG 1284


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 267  ISRVNSLTSRRCWNAI--SGRSPCSCERPAVG 178
            +++V  L+S R   +I   G+SPCSC+  A G
Sbjct: 1435 LNQVRKLSSDRSTFSILTGGKSPCSCDVAACG 1466


>AB039949-1|BAC06512.1|  747|Caenorhabditis elegans kinesin protein.
          Length = 747

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = +2

Query: 173 LPPTAGLSQEQGD-------RPEMAFQHRRDVRELTREIIRDSRVI 289
           LPP+A  S E+ D          +A  H R++++++ +IIR++ ++
Sbjct: 668 LPPSADKSDEEYDEMVEKQEHRRVAVDHVRNLKDMSEKIIRETTIV 713


>AB017164-1|BAA32661.1|  689|Caenorhabditis elegans Kinesin like
           protein (klp-7) protein.
          Length = 689

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = +2

Query: 173 LPPTAGLSQEQGD-------RPEMAFQHRRDVRELTREIIRDSRVI 289
           LPP+A  S E+ D          +A  H R++++++ +IIR++ ++
Sbjct: 610 LPPSADKSDEEYDEMVEKQEHRRVAVDHVRNLKDMSEKIIRETTIV 655


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 301 CCLLDDARVPDDFSGQFPHVTSV 233
           CC+ +D RV  +   Q+ H+T +
Sbjct: 153 CCVYEDPRVLANIDDQYLHITGI 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,711,576
Number of Sequences: 27780
Number of extensions: 156699
Number of successful extensions: 371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)