Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6111
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   8.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   8.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   8.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 NYVTSHGRSLTRTGRPARNGIPTPT*REGID 258
           N+ TS+G S   +G+P +    TP   +G D
Sbjct: 45  NFETSNGISHQESGQPKQVDNETPVVSQGSD 75


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 171 CYLPRPVSHKNRAT 212
           C LPRP S  N A+
Sbjct: 628 CLLPRPKSENNFAS 641


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 171 CYLPRPVSHKNRAT 212
           C LPRP S  N A+
Sbjct: 596 CLLPRPKSENNFAS 609


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 42  RHELRSVNGIRGTR 1
           RHE+RS + I GT+
Sbjct: 525 RHEIRSTDVIPGTQ 538


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 89  YVLKKSNSCGQWSRNQNK 142
           + L   N CG+WS  +++
Sbjct: 359 FKLMLPNCCGKWSSQKSE 376


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 257 SIPSRHVGVGMPFRAGRPVLVRDRPWEVT 171
           S  + H     P    +P L+ D P EVT
Sbjct: 255 SSETNHNERSTPRSHAKPSLIDDEPTEVT 283


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 257 SIPSRHVGVGMPFRAGRPVLVRDRPWEVT 171
           S  + H     P    +P L+ D P EVT
Sbjct: 255 SSETNHNERSTPRSHAKPSLIDDEPTEVT 283


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 257 SIPSRHVGVGMPFRAGRPVLVRDRPWEVT 171
           S  + H     P    +P L+ D P EVT
Sbjct: 255 SSETNHNERSTPRSHAKPSLIDDEPTEVT 283


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 164  STMLPPTAGLSQEQGDRPEMAFQHR 238
            +T+LPP    SQ+Q  + +   Q +
Sbjct: 964  TTILPPVKVQSQQQSQQSQQQQQQQ 988


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,840
Number of Sequences: 438
Number of extensions: 1908
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)