Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6110
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    28   1.4  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    27   4.2  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    27   4.2  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   4.2  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.6  

>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 377 SLFPPLPTDVNSSNFMS--NLNFDEISDRPAPVVDELRRMNLRARHRK 514
           SL P  PT  N +NF S  + + D  SD P   +    R+ ++   RK
Sbjct: 223 SLTPSQPTTYNRANFFSINDASSDSSSDAPLRTLSSPSRLRMKDNDRK 270


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 8   WRRGSRPPSHQTAPPSTIATTRSQSEPQCCV--VERSDGYAD 127
           WRRG++P S +T+ PS  +   S+ E +  +  V++  GY +
Sbjct: 154 WRRGAKPLS-KTSEPSVYSEKMSKRENKKSINTVDKKTGYKE 194


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 220 LPLVCVCRRYPASFHRAHGPDNSSRNWTVVELNMCQIL 333
           L L+    R  A+ + + GP N S   T+ ELN C +L
Sbjct: 8   LTLLFAAARVQAASNCSSGPYNISAQGTLDELNSCTVL 45


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = -2

Query: 423 IKFEELTSVGSGGKRESRPPRALSYT-TVTTQYLAHIQLHNG----PVP*TIVRSVRSVE 259
           +K EE   VGS  K E     +L+YT    T ++  +QL  G      P T+V  +R++ 
Sbjct: 384 LKVEEQPLVGSAIKNEGSEKASLAYTYPCPTSHVEFVQLLKGLDYKDYP-TVVSRIRTLH 442

Query: 258 RGRIAPAHTHERQMSVSVNSVKYLL 184
             ++ P     R  + SV  ++++L
Sbjct: 443 HVKLHP-DNKSRLENFSVILLQHIL 466


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 211 DAHLP---LVCVCRRYPASFHRAHGPDNSSRNWTVVELNMC 324
           DAHLP   + C+      ++  + G DN+ R W +   N C
Sbjct: 293 DAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLRNSNKC 333


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 229 VCVCRRYPASFHRAHGPDN 285
           +C+ R  P  +HR H P N
Sbjct: 824 ICISRLAPQDYHRFHSPVN 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,309
Number of Sequences: 5004
Number of extensions: 62581
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)