Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6110
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0820 + 6202348-6203313                                           29   5.8  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   5.8  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    29   5.8  
12_01_0083 - 670613-670616,673149-674077,674652-674818,675520-67...    28   7.6  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    28   7.6  

>06_01_0820 + 6202348-6203313
          Length = 321

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 414 EELTSVGSGGKRESRPPRALSYTTVTTQYLAHIQLHNGPVP*TIVRSVRS 265
           + LTS  S  +R + P  A  ++T+ T YL++     G  P    R V S
Sbjct: 76  QSLTSTSSSSQRAATPSAAQWWSTLATVYLSNATTGGGGKPAAATRVVLS 125


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 11  RRGSRPPSHQTAPPSTIATTRSQSEPQCCVVERSDGYAD 127
           +RG+ P  H     +T  +  S S P+ CVV+  D  A+
Sbjct: 266 KRGAPPTMHGLEVKTTTKSNVSDSPPRSCVVDDDDDVAE 304


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 90  CGSD*DLVVAIVDGGAVWWLGGR 22
           CG+   +VV ++D   VWWLG R
Sbjct: 270 CGNFSKVVVCLLDDRLVWWLGWR 292


>12_01_0083 -
           670613-670616,673149-674077,674652-674818,675520-675628
          Length = 402

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -2

Query: 444 SSKFKFDIKFEELTSVGSGGK-------RESRPPRALSYTTVTTQYL 325
           +S+F++ I+FE   +V  GGK        +S PP     T VTT Y+
Sbjct: 37  ASRFRWCIRFEVEAAVSLGGKLGNDDTVEKSEPPMLFWSTLVTTSYV 83


>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 432  KFDIKFEELTSVGSGGKRESRPPRALSYTTV 340
            K DI+ + L SV  GGKRE+     LSYT V
Sbjct: 1791 KADIE-DYLASVAKGGKREALAAPGLSYTDV 1820


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,499,408
Number of Sequences: 37544
Number of extensions: 410538
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)