Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6110
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    29   5.2  
AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (...    29   5.2  
Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20   SRPPSHQTAPPSTIATTRSQSEPQCCVVERS 112
            S PP  Q +PP +I +   +S P C  ++RS
Sbjct: 946  SCPPVKQASPPGSITSIPKESLPNCPPLDRS 976


>U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical
           protein F08F3.6 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 566 IKLCCYFSFTKFHSSSVLCDVELEG 492
           +KLC  F FT FH  S L  V+L+G
Sbjct: 109 LKLCLDFFFTIFHCRSGLATVKLDG 133


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 444 SSKFKFDIKFEELTSVGSGGKRESRPPRALSYT 346
           S KF FD  FE++  +  G  R S+P   L +T
Sbjct: 156 SDKFIFDHSFEKVDGLAEGDMRRSQPITHLDFT 188


>AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (grd
           related) protein13 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 572 NYIKLCCYFSFTKFHSSSVLCDVELEG 492
           N+  +C  F F+   SS++ C VEL+G
Sbjct: 239 NFDVICSQFDFSYLISSNIFCRVELDG 265


>Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.10 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 VLNGIDTDAHLPLVCVCRRYPASF 261
           ++NG+   A LPL CVC  +  SF
Sbjct: 231 LINGLTLQAFLPLFCVCPIFICSF 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,581
Number of Sequences: 27780
Number of extensions: 360854
Number of successful extensions: 972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)