Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6110
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.12 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    26   0.36 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    26   0.36 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    26   0.36 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 193 LNGIDTD--AHLPLVCVCRRYPASFHRAHGPDNSSRNWTVVELN 318
           +NG+ T+  A LPL+C  + +P   HR +     S     V+LN
Sbjct: 219 INGLSTESKADLPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLN 262



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 386  PPLPTDVNSSNFMSNLNFDEISDRPAPVVDEL--RRMNLRARHRKGHSTSE 532
            PP   D N+S+F  +   +EIS+      D+L  R   + AR + G +T E
Sbjct: 1863 PPRNHDQNNSSFNDSKESNEISEAECD-RDQLVNRNYGVNARGKDGMTTEE 1912


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 391 WGEEGEPSTACAKLHNRDYAIF---GTYSTPQRSSSLNYCPV 275
           W EE EP T C     + Y I+   G++  P    SL Y  +
Sbjct: 178 WPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLEI 219


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 391 WGEEGEPSTACAKLHNRDYAIF---GTYSTPQRSSSLNYCPV 275
           W EE EP T C     + Y I+   G++  P    SL Y  +
Sbjct: 178 WPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLEI 219


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 391 WGEEGEPSTACAKLHNRDYAIF---GTYSTPQRSSSLNYCPV 275
           W EE EP T C     + Y I+   G++  P    SL Y  +
Sbjct: 178 WPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLEI 219


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  RGSRPPSHQTAPPSTIATT 70
           R   PP+  T+ P+TI TT
Sbjct: 92  RPLHPPASSTSLPATITTT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,164
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)