Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6107
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 33 0.030
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 27 3.5
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 4.6
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 4.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 8.0
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 8.0
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 8.0
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.0
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 25 8.0
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 8.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 8.0
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 33.5 bits (73), Expect = 0.030
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 242 KFSLSILSWT*IRVVFVTSHPSAPNTPMSSSWSRLAV---GLKAAPSTHTWWPR--RALG 406
KF +S++S+ R + S+P NTP++ V G S H +WP+ +LG
Sbjct: 193 KFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLG 252
Query: 407 CPSSEALS 430
PS +A+S
Sbjct: 253 FPSPDAIS 260
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.5
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Frame = +1
Query: 163 YGIEDIPVDLCT--HLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTSLRSKHP----- 321
+G ED V L T H ++ + + + + P D D S F HP
Sbjct: 116 FGTEDDLVSLITAAHKAGIWVMLDSIVNSMALAPPLADADYSSLNPFNKESYFHPYCLID 175
Query: 322 -DV--KFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 471
D+ + W + G + + + S S++ + KYDFDGL +D
Sbjct: 176 WDITDNETNVMDCWQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 313 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 411
+HP KF+V VGG+ ++ H K T S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 391 QKSTRMSFIRSVVDFLKKYDFDGLDLD 471
+ R F V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 290 VTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWIS 469
V S S+P++ SS+ + ++ + PST + + SS + ST+ + +S+ IS
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIIS 274
Query: 470 TGS 478
+ S
Sbjct: 275 SSS 277
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 14 TNRNC*KCERYLRRWLSWRVAP 79
T +C +CERY++ +W +AP
Sbjct: 58 TVNHCRECERYMQPPNNWMIAP 79
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 43 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 213
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 214 FIGVTEKSSEVLI 252
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 43 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 213
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 214 FIGVTEKSSEVLI 252
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 627 LHQPE-ISKRYGSSQLPSSIGSDERPL*LLDEIQEL 523
L PE I + QLPS++ DE+ L L DEI L
Sbjct: 13 LFSPESIEQSLKRCQLPSTLLYDEKGLRLFDEITNL 48
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 81 CGATRQDSQRRKYRSHFQQLR 19
CG TR Q++ R F+QLR
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLR 442
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 43 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 213
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 214 FIGVTEKSSEVLI 252
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 109 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGVTEKSSEVLIIDPELDVDKSG 285
R + F NW + RP Y I + L +L + + EK ++++ + D+
Sbjct: 28 RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87
Query: 286 FRNF 297
F F
Sbjct: 88 FVQF 91
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 465 IQTVEVIFLQEVDNASD 415
+ TVE+ LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,348
Number of Sequences: 5004
Number of extensions: 60512
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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