Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6107
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 50 1e-06
11_04_0234 + 15187065-15188241,15188316-15188494 50 2e-06
10_08_0011 + 14088375-14089241 33 0.22
01_03_0028 - 11783122-11783381,11783668-11784163 31 0.90
10_08_0009 + 14075929-14076789 31 1.2
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 29 2.7
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 29 2.7
03_06_0754 - 36025579-36027000 29 3.6
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 4.8
10_08_0007 + 14044844-14045767 28 6.3
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 28 6.3
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 8.4
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 8.4
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 50.4 bits (115), Expect = 1e-06
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Frame = +1
Query: 178 IPVDLCTHLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFT-SLRSKHPDVKFMVAVG-G 351
+ + THL Y + V + L++ P+ S +F+ ++++K+ VK ++++G G
Sbjct: 59 LDASMYTHLYYYAVAV-HPARRTLLLPPD-PAAASLLGDFSRAVKAKNAAVKTVLSIGRG 116
Query: 352 WAEGGSK----------YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAADRG 501
GG+ ++ M A ++R +FI + V ++ FDGLD+ W +P +A
Sbjct: 117 GGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFPASA--- 173
Query: 502 GSFSDKDEFLYFVQELKRAFIRADRGWELTAAVPLANFRL---MEGYHVPE--LCQELDA 666
+ EF + V E + A RG+ LTA V +N G P + + LD
Sbjct: 174 ---VEMAEFGFLVAEWRAA---VPRGFLLTATVYFSNHVFDAPFAGVDYPSETVARSLDW 227
Query: 667 IHVMSYDLR 693
++VM++ LR
Sbjct: 228 VNVMAFGLR 236
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 50.0 bits (114), Expect = 2e-06
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 13/197 (6%)
Frame = +1
Query: 148 PGVGRYG-IEDIPVDLCTHLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTS-LRSKHP 321
P Y + I L +HL YS + + E + + P + S NF+S ++S
Sbjct: 48 PSSSHYSPLGSIDTSLYSHLYYSSLSIDE--TRCAVAPPSSGEESSILSNFSSSIKSSGG 105
Query: 322 D--VKFMVAVGG--WAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 483
VK ++++G + E S +S M ++K+ R +FI S ++ + FDGLDL W +P
Sbjct: 106 GFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
Query: 484 GAADRGGSFSDKDEFLYFVQELKRAFIRADRGWELTAAVPLAN--FRLME---GYHVPEL 648
+ D + + ++ + R+ LTA V +N F + + Y + ++
Sbjct: 166 ATQLDMENLGDL-LAEWRAEIMEDSTTRSTEPLLLTATVYFSNHLFGMADTNLNYPIDDM 224
Query: 649 CQELDAIHVMSYDLRGN 699
LD ++++++ L N
Sbjct: 225 SSSLDWVNIITFSLHKN 241
>10_08_0011 + 14088375-14089241
Length = 288
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 250 IIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRS 423
+ P D + ++++ HP+V MV +GG + + + + S + + S
Sbjct: 56 VFSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVAS 115
Query: 424 VVDFLKKYDFDGLDLDWEYPGAADRGGSFSD 516
V + Y DG+D+D+E+ D GG+ D
Sbjct: 116 VSGIIDAYGLDGVDVDYEH--FNDDGGAGVD 144
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 433 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDEFLYFVQELKRAFIR 567
F+ K++ DG D DW++P AD F D D + V+ L + R
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 307 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 474
++ HP++ ++A+GG + + A S+ +++R+ D + Y DG+D+D+
Sbjct: 75 KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134
Query: 475 EY 480
E+
Sbjct: 135 EH 136
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 632 YPSISLKLAS-GTAAVSSHPLSALMNALFNSWTKYKNS--SLSEKEPPRSAAPGY 477
YP+I+L L S AA SSH +L N S T+Y ++ + S P + PGY
Sbjct: 406 YPTITLDLTSPAAAATSSHAAFSLSNRF--SHTRYPSTGFTFSGSGPSSAPWPGY 458
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 623 ISLKLASGTAAVSSHPLSALMNALFNSWTKYKNSSLSEKEPPRSA 489
+SLK A+ ++ L L A+FN+ +KYK SS + R+A
Sbjct: 483 LSLKRANEIIGATTEELDLLYYAMFNACSKYKCSSSYQLSKKRAA 527
>03_06_0754 - 36025579-36027000
Length = 473
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 251 LSILSW-T*IRVVFVTSHPSAPNTPMSSSWSRLAVGLKA 364
++I SW T +R ++S PS P++ SSSW VG+ A
Sbjct: 1 MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 635 WYPSISLKLASGTAAVSSHPLSALMNALFNSWTKYKNSSLSEKEPPRSAAPGYS 474
W K T SS PL A N S T ++S PP S++P Y+
Sbjct: 674 WKKRAMTKQTDRTGHPSSDPLIADCNICLKSATSGTLDTISPSSPPPSSSPPYN 727
>10_08_0007 + 14044844-14045767
Length = 307
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 301 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 477
S++ +P+V+ V++GG + ++ + S + + S+ ++ + DG+D+D+E
Sbjct: 95 SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 498 PVGGTGILPVEIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 358
PV GT + V V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 639 YMV--SLHQPEISKRYGSSQLPSSIGSDERPL*LLDE 535
YM+ SLH+P +S Y +LP+ + D+ L +D+
Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 316 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 414
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,081,493
Number of Sequences: 37544
Number of extensions: 466027
Number of successful extensions: 1445
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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