Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6106
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    49   2e-07
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   2.6  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 782

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 37/124 (29%), Positives = 54/124 (43%)
 Frame = +1

Query: 1    AAYVQNMEKGRLREALRHVLSISRLGNQHMQSEQPWVLLKGSEDDKQRGATAIGXXXXXX 180
            A Y   +E  +LRE LR  + IS  GNQ++Q  +  +  K    ++Q+ A AIG      
Sbjct: 654  AKYNAALEASKLREGLRLAMEISARGNQYLQDNR--IDNKCYLYERQKCADAIGYALNLI 711

Query: 181  XXXXXXXXPYVPDATRKLRGQLNVDAEKXXXXXXXXXXXXXXXXGHVIGKPEPLFVKIEQ 360
                    PY+P  +  +  QLN  A                  GH IG+PE LF +I++
Sbjct: 712  YLLAAIFYPYMPSTSTSIYKQLNAPA-----AAIPDTWELCLLPGHRIGEPEYLFTRIDE 766

Query: 361  ERLE 372
               E
Sbjct: 767  SMEE 770


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  HVLSISRLGNQHMQSEQPWVLLKGSEDD 135
           HV     L N+ M+SEQ   LL  SE+D
Sbjct: 573 HVSKFEDLENKSMESEQSLQLLSESEND 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,745
Number of Sequences: 5004
Number of extensions: 15631
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)