Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6106
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787...    43   8e-05
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    39   0.002
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285...    30   0.83 
08_01_0284 - 2314093-2314650                                           27   5.8  
04_01_0363 + 4754650-4755912                                           27   7.7  

>10_07_0110 +
           12977702-12977958,12978374-12978527,12978661-12978798,
           12978903-12979133,12979228-12979371,12979516-12979606,
           12979798-12979868,12980014-12980128,12980313-12980431,
           12980539-12980604,12980701-12980829,12980919-12981062,
           12981522-12981704
          Length = 613

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
 Frame = +1

Query: 7   YVQNMEKGRLREALRHVLSISRLGNQHMQSEQPWVLLKGSEDDKQRGATAIGXXXXXXXX 186
           Y+  M+K ++++ L+  ++IS  GN ++Q  Q W L K    D    AT +         
Sbjct: 434 YIDAMDKVKIKQGLKIAMAISSEGNAYLQESQFWKLYK---QDPASCATVMKTSVGIVYL 490

Query: 187 XXXXXXPYVPDATRKLRGQLNVDAEKXXXXXXXXXXXXXXXX-------GHVIGKPEPLF 345
                 P++P  ++ +  QLN+  E+                       GH IGKP PLF
Sbjct: 491 LACLLEPFMPTFSKDVLQQLNLSPEEHLSFCDEKGEVEKAKRPWDLIPSGHRIGKPAPLF 550


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 22/110 (20%), Positives = 41/110 (37%)
 Frame = +1

Query: 34  LREALRHVLSISRLGNQHMQSEQPWVLLKGSEDDKQRGATAIGXXXXXXXXXXXXXXPYV 213
           L  A   ++ I  LGN ++  + PW   K   +  ++ A  +               P  
Sbjct: 336 LSSACETLMEIGNLGNLYIDEQAPWSCFKQGGESAEKAAKDLVIILETMRIIAIALSPIT 395

Query: 214 PDATRKLRGQLNVDAEKXXXXXXXXXXXXXXXXGHVIGKPEPLFVKIEQE 363
           P  + ++  QL    ++                G V+ +P+P+F +IE E
Sbjct: 396 PSLSLRIYTQLGFTEDQFRTLRWEDTKWGGLKAGQVMMEPKPVFARIETE 445


>06_03_0207 -
           17927753-17927983,17928077-17928178,17928273-17928502,
           17929257-17929343,17931263-17931389,17931485-17931628,
           17931920-17931985,17932136-17932254,17932437-17932551,
           17932626-17932732,17932969-17932983,17933810-17933900,
           17934528-17934671,17934750-17934980,17935093-17935248,
           17935330-17935483,17935973-17936117,17936241-17936355
          Length = 792

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 313 GHVIGKPEPLFVKIEQERLE 372
           GH IGKP PLF +++ E +E
Sbjct: 521 GHKIGKPSPLFKELKDEEVE 540


>08_01_0284 - 2314093-2314650
          Length = 185

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 77 PSLEMDSTCLNASRRRPFSMFC 12
          PS+ MD  CL AS  +P    C
Sbjct: 31 PSMSMDDACLKASTSQPLLALC 52


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 70  RLGNQHMQSEQPWVLLKGSEDDKQRGATAIG 162
           R GN+  + +   VL  G  DD++RGAT  G
Sbjct: 118 RTGNRGRKGKGEGVLTGGDGDDRRRGATEGG 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,023
Number of Sequences: 37544
Number of extensions: 137866
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)