Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6106
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    70   6e-13
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   7.0  

>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 36/112 (32%), Positives = 58/112 (51%)
 Frame = +1

Query: 34  LREALRHVLSISRLGNQHMQSEQPWVLLKGSEDDKQRGATAIGXXXXXXXXXXXXXXPYV 213
           L++A++ +L++SRLGNQ+MQ++ PWVL+K  E+ K+R  T IG              P +
Sbjct: 475 LKDAVKTILNVSRLGNQYMQAQTPWVLMKKDEEGKKRAGTIIGVAANIAYHVSVLLYPIM 534

Query: 214 PDATRKLRGQLNVDAEKXXXXXXXXXXXXXXXXGHVIGKPEPLFVKIEQERL 369
           P  +  +R Q  + A                  GH IG+P PLF K++  ++
Sbjct: 535 PTISATIREQCGLPA----LPLFTPFPICYLKAGHKIGQPSPLFQKLDPAQI 582


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -3

Query: 153 CCAPLLIILASFEQHPGLLGLHVLVSEPGDGQHVPQCLTQTALLHVLHV 7
           CC  ++  L      PG+ G+   + + G G+ + Q +    +L V  +
Sbjct: 436 CCRRIMATLMLLTVTPGIFGVFFFLGQEGVGETISQNVVVQGVLDVFSI 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,146,060
Number of Sequences: 27780
Number of extensions: 99304
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)