Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6104
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.4  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   5.5  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   7.2  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 557 YPDVAESFRPETYNLYPSE 501
           YPD AESF  + Y L PSE
Sbjct: 295 YPDDAESFMHDAYLLIPSE 313


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 487 IQDIYSLGYKLYVSGRKLSATSGY 558
           I+D  S G K+ V G+++S++ GY
Sbjct: 353 IEDAVSKGAKITVGGKEISSSKGY 376


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 772 LFRHVKKQGRSSKYSVDHH--*VAFAFSKNKG 683
           LFR +K +G + KY + +H   +  A +KNKG
Sbjct: 338 LFRALKTRGNTPKYGIIYHSSFIGKAGAKNKG 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,691
Number of Sequences: 5004
Number of extensions: 53468
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)