Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6101
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   316   7e-87
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   9.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  316 bits (777), Expect = 7e-87
 Identities = 140/210 (66%), Positives = 178/210 (84%)
 Frame = +2

Query: 71  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 250
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 251 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 430
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 431 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 610
           V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180

Query: 611 SPFSYGLVVKQVYDSGTIFAPEILDIKPED 700
           +PFSYGLVV+QVYD GT++ PE+LD+  E+
Sbjct: 181 TPFSYGLVVRQVYDDGTLYTPEVLDMTTEE 210


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
 Frame = +2

Query: 44  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 223
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 224 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 397
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 398 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 574
            AR G +A  +VV+P    +          + L +PTK+ KG I +     + K G+ + 
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLT 184

Query: 575 ASEATLLNMLNISPFSYGLVVK 640
             +A +L    +    + L+ K
Sbjct: 185 VEQAKILKHFEVKMSQFRLIFK 206


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 228 CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQ 401
           CSW        P S+T +   QP+ N     R     C+P     ++S    W T S+  
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332

Query: 402 LVPVPLPHCQSSFP 443
            +P P P+  +  P
Sbjct: 333 TLPTPAPYVSTQAP 346


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 219 PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 386
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 26  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 139
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 411 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 551
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 435 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 325
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 324 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 497
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 498 SLPKFQRV 521
            L  F ++
Sbjct: 511 LLQNFLKL 518


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 374 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 523
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 385 VLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 236
           +L     DL E S   HE+   LDVW++ L      Q +  G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 288 QPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPVPLPHCQSSFPPTTPAS 461
           Q  +N C ++ +     S  + S ++ ++C+   T + +Q  P  +P C+ S    TPA+
Sbjct: 90  QSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148

Query: 462 VQRKP 476
           VQ  P
Sbjct: 149 VQCVP 153


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 396 LQLVPVPLPHCQSSFPPTTPASVQRKPL 479
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
 Frame = +2

Query: 89  ATWKSNYFVKIIQLLDEYP---KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRK 259
           A W  + F+K ++   E+     C   G D+   ++ + +         V   + T+  +
Sbjct: 337 ALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYEAEGRV---RKTVKAR 393

Query: 260 AIKDHLDNNPALEKLLPHI--KGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 433
            + +H+ +N  +E  LP+I  K        + +L  ++   L  ++   + P  IA  ++
Sbjct: 394 KLWEHIVSNQ-IETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNL 452

Query: 434 VIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 547
              A N  + PEK   F  L+  TK+    +  I DV+
Sbjct: 453 ASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVN 490


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 477 LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHMVLLLSRYMIL 656
           L+S   P+L  +Q       T   S      L+L+  PFST  T +HSH++  L  +++L
Sbjct: 251 LTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLI--PFSTAKTVIHSHIISFLIGFLLL 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,384,111
Number of Sequences: 27780
Number of extensions: 421763
Number of successful extensions: 1469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)