Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6099
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   3.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   4.1  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   7.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.1  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 256 INSALYVLFCRAHITYVASQILFLFTCV 173
           I S+L +L C A ++ +     F+FTC+
Sbjct: 717 IFSSLLILACYAFVSLICMDPFFIFTCI 744


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 589 FIVIIIRGSNTHINISLSSTRIFYTNTKFQVNRMHGSVV 473
           F V+ + G  TH   ++  T   Y N  F+VN    S +
Sbjct: 32  FAVLTVDGEQTHTTTAIKKTLNPYWNETFEVNVTDNSTI 70


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 155 LKIYIKNTSKKKQNLACNISY 217
           LKIY+K    K QNLA N+ +
Sbjct: 62  LKIYVKAQQHKTQNLAINLDH 82


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -2

Query: 259 CINSALYVLFCRAHIT-----YVASQILFLFTCVFYVY 161
           CI S+  VLF  AH+T      + + +LF   C  Y Y
Sbjct: 176 CIVSSSLVLFDNAHVTEGRLILLDATLLFSMVCAIYCY 213


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 134 AHNTHHKLKIYIKNTSKKKQNLACNISYVRTTKQDI 241
           +H+ HH  K    ++SK K+N   ++S   TT   I
Sbjct: 553 SHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSI 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,212
Number of Sequences: 5004
Number of extensions: 68189
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)