Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6099
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    28   7.4  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    28   7.4  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   7.4  
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548...    28   9.8  

>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 277 NCKERCC-INSALYVLFCRAHITYVASQILFLFTCVFYVY 161
           NC E  C +N  L++  C  HIT      +F   C+  VY
Sbjct: 327 NCIEIACHLNGLLFLQNCLGHITLEEKYKIFTQVCINSVY 366


>04_04_0859 +
           28805836-28805842,28806405-28806492,28807474-28807558,
           28807638-28807763,28807819-28807968,28808497-28808541,
           28808612-28808875,28809843-28809887,28810395-28810430,
           28812048-28812816,28813063-28813925,28814024-28814182,
           28814440-28814558,28815356-28815417,28816677-28816805,
           28817395-28817460,28817757-28817890,28818025-28818162,
           28818630-28818889,28818996-28819107,28819590-28819675,
           28820655-28820735,28822841-28822928,28823222-28823260,
           28823847-28823964,28824063-28824130,28824884-28824981,
           28825238-28825397,28825691-28825816,28825876-28825945,
           28826046-28826449
          Length = 1664

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 329 KNIYSQYNTLNNYINLPILEVKISNSD 409
           + I  QYNTL   +N  I  V ISNS+
Sbjct: 894 REIIDQYNTLRKQLNNAIPSVSISNSE 920


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 665 RAHSLGSSMCPELLIEIWYVI 727
           R H  GSS CP  + ++WY++
Sbjct: 767 RIHCCGSSTCPTWMNKLWYMV 787


>02_01_0735 +
           5484398-5484400,5484670-5484773,5485012-5485138,
           5485212-5485306,5485597-5485720,5486523-5486603,
           5487177-5487275,5487416-5487583,5487688-5487775,
           5487860-5487930,5488000-5488068,5488368-5488499,
           5488740-5488946
          Length = 455

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 164 YIKNTSKKKQNLACNISYVRTTKQ 235
           Y+     +K++L C +SY+RTTKQ
Sbjct: 71  YVSLGWHEKEDLKCVVSYLRTTKQ 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,004
Number of Sequences: 37544
Number of extensions: 358505
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)